Pairwise Alignments

Query, 427 a.a., porin from Pseudomonas simiae WCS417

Subject, 410 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  263 bits (671), Expect = 1e-74
 Identities = 155/404 (38%), Positives = 225/404 (55%), Gaps = 28/404 (6%)

Query: 29  FIKDSKADLDLKNYYFNRDYREDAGQSKREEWAQGFILNLKSGFTEGTVGFGVDVVGMLG 88
           F+ D+KA L L+N+Y NRDY   A Q K EEW Q FI + KSG+T G VGFGVDV+G+  
Sbjct: 28  FVDDAKASLTLRNFYMNRDYTGTASQGKAEEWTQSFIFDFKSGYTPGVVGFGVDVLGLYS 87

Query: 89  LKLDSSPDRSGSGLLSRDNDATPGKPSYSKRAHDEYSKYGVTGKVRFAQSELRSGYLLPD 148
           +KLD     +G+ LL   +D  P          D++ +  + GK+R +++EL+ G   P 
Sbjct: 88  IKLDGGKGTAGTQLLPVHDDGRPA---------DDFGRTALAGKMRVSRTELKVGEWSPT 138

Query: 149 LPTLQPNTSRLFPQTFRGTQVTSTDIAGLALIGGQIDQTKQRESTEYEDMGLTSQSGAYK 208
           LP L+ +  R  PQT +G QVTS ++AGL+L GGQ  Q   R     +DM L +     +
Sbjct: 139 LPILRADDGRSLPQTLQGAQVTSNELAGLSLYGGQFRQNSPRNDASMQDMSLFT-----R 193

Query: 209 STAKSDRFRFAGGDYKLTPGMTL-SYHFAQLEDIYQQHFVGLKNSFALGGGTLKTDIRYF 267
           +   SDRF FAGG+Y+     TL    +AQLEDIYQQ +  +++   LG   L  ++ YF
Sbjct: 194 TAFTSDRFNFAGGEYRFNQERTLVGAWYAQLEDIYQQRYFQVQHQQPLGNWVLGANLGYF 253

Query: 268 DADKSGAGLAGKVDNRALSTRAMFSYK--GHSLGGGYQEQYGDTPFTYVDG-TNTYLFSE 324
                G   AG+++NR  S   +FS K  G++   G Q+  GD  +  V+G +   L ++
Sbjct: 254 WGKDDGGAKAGELNNRTAS--GLFSAKLGGNTFYVGLQKVMGDDEWFRVNGASGGTLAND 311

Query: 325 YQLSNFSQTNERVWHARYDFDFAALGVPGLTFSTRWAKGDQAQVKGFAGEGREWERDIDL 384
              S++    ER W  R+DF+F  LG+PGLT   R+  G    V   + +GRE E    L
Sbjct: 312 AFGSSYESARERSWQVRHDFNFVVLGIPGLTLMNRYIHG--YNVHNASTQGRESE----L 365

Query: 385 GYVFQSGTLKGVSLRWRNGLSKANY--LRDMNENRVIVGYTVAL 426
            YV QSG  K ++L+WRN   + ++      +ENR+IV Y ++L
Sbjct: 366 AYVVQSGPFKALNLKWRNSSQRRDWGSTNSFDENRLIVSYPLSL 409