Pairwise Alignments

Query, 427 a.a., porin from Pseudomonas simiae WCS417

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  234 bits (597), Expect = 4e-66
 Identities = 147/437 (33%), Positives = 225/437 (51%), Gaps = 40/437 (9%)

Query: 7   NLILKGVGLMSGGLLCAPAQAD---FIKDSKADLDLKNYYFNRDYRE-DAGQSKREEWAQ 62
           ++I   V   +  L  A AQ +   FI+DSK  +  +  YF+RD+R  + GQS+REE   
Sbjct: 7   SMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGL 66

Query: 63  GFILNLKSGFTEGTVGFGVDVVGMLGLKLDSSPDRSGSGLLSRDNDATPGKPSYSKRAHD 122
           GF+   +SGFT+GTVG GVD +GMLGLKLDS   R+G+GL    +D          R+ D
Sbjct: 67  GFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDG---------RSQD 117

Query: 123 EYSKYGVTGKVRFAQSELRSGYLLPDLPTLQPNTSRLFPQTFRGTQVTSTDIAGLALIGG 182
           +YSK G   K R + + L+ G     LP    + SRL P+  +GT +TS +I GL L  G
Sbjct: 118 DYSKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAG 177

Query: 183 QIDQTKQRESTEYEDMGLTSQSGAYKSTAKSDRFRFAGGDYKLTPGMTLSYHFAQLEDIY 242
                  +E T  +  GL   +               GG Y  T  ++ S +++++ED +
Sbjct: 178 HFTSLTAQEQTNRDSFGLKEAN-------------VVGGTYAFTDNLSTSLYYSKVEDYW 224

Query: 243 QQHFVGLKNSFALGGGT-LKTDIRYFDADKSGAGL-----AGKVDNRALSTRAMFSYKGH 296
           ++++  +  +  +     L  D   +D    G+         K+DNRA S    ++   H
Sbjct: 225 RKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAH 284

Query: 297 SLGGGYQEQYGDTPFTY-VDGTNT-YLFSEYQLSNFSQTNERVWHARYDFDFAALGVPGL 354
           +    YQ+  GD  + Y +DG  T +L +    S+F+  +E+ W ARYD +FA  G+PGL
Sbjct: 285 TFTLAYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGL 344

Query: 355 TFSTRWAKGDQAQVKGFAGEGREWERDIDLGYVFQSGTLKGVSLRWRNGLSKAN-----Y 409
           TF TR+ +G  A V G    G+EWERD+D+ YV Q G  K +S R R    +++      
Sbjct: 345 TFMTRYVRGSDANVAG-TSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYD 403

Query: 410 LRDMNENRVIVGYTVAL 426
              ++E R+IV Y +++
Sbjct: 404 SPSIDELRLIVEYPLSI 420