Pairwise Alignments

Query, 427 a.a., porin from Pseudomonas simiae WCS417

Subject, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  216 bits (549), Expect = 1e-60
 Identities = 139/427 (32%), Positives = 215/427 (50%), Gaps = 38/427 (8%)

Query: 25  AQAD------FIKDSKADLDLKNYYFNRDYREDAGQSKREEWAQGFILNLKSGFTEGTVG 78
           AQAD      FI+ S  +L  +N YFNRD   +AG     EW QG +   +SG+T G VG
Sbjct: 22  AQADEDKADGFIEGSSFNLHFRNAYFNRD-NHNAGVRDTREWGQGAVARFESGYTPGVVG 80

Query: 79  FGVDVVGMLGLKLDSSPDRSGSGLLSR--DNDATPGKPSYSKRAHDEYSKYGVTGKVRFA 136
           FG+D   MLGLKLD     +G+ +L     +D   G   +S      +S  G   K++  
Sbjct: 81  FGLDAHAMLGLKLDGGGGHAGTSILPEHIKDDGELGAAPHS------FSTAGAAVKLKAF 134

Query: 137 QSELRSGYLLPDLPTLQPNTSRLFPQTFRGTQVTSTDIAGLALIGGQIDQTKQRESTEYE 196
            +EL++G L    P +    +R+ PQTFRG  +T+T I GL L GGQ+  T     + + 
Sbjct: 135 DTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEGGQVSFTHPYNQSGHR 194

Query: 197 DMGLTSQSGAYKSTAKSDRFRFAGGDYKLTPGMTLSYHFAQLEDIYQQHFVGLKNSFALG 256
              + +  G+     KS    +AG  +  T  +T + + A+L+DI+ Q++     ++ + 
Sbjct: 195 --RIDTYYGSLDEHDKSKHLNWAGASWSGTEHITANLYAAELKDIWNQYYADFDYTYVVN 252

Query: 257 G-GTLKTDIRYFDADKSGAGLAGKVDNRALSTRAMFSYKGHSLGGGYQEQYGDTPFTYVD 315
              +L   + ++    +G  L GK+DN   S     +   HS+   YQ   G+TPF Y++
Sbjct: 253 DLVSLNPGVHFYHTQDTGQALLGKIDNNTYSVHFTVNAGFHSVTAAYQRVNGNTPFDYIN 312

Query: 316 -GTNTYLFSEYQLSNFSQTNERVWHARYDFDFAALGVPGLTFSTRWAKGDQAQVKG---- 370
            G + YL +    S+F+  NER W  +Y +DFA +GVPGL+ S  +++G+    K     
Sbjct: 313 LGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLSTSLSYSRGEADLTKATQDT 372

Query: 371 -----FAGEGR---EWERDIDLGYVFQSGTLKGVSL-------RWRNGLSKANYLRDMNE 415
                +  +G+    WERD+D+ YVFQ G LK +S+       R   G +  +   D +E
Sbjct: 373 THYDYYREDGKNAMHWERDLDVKYVFQEGDLKDLSVLVRYATHRGSQGYASIDSNSDNDE 432

Query: 416 NRVIVGY 422
            RVIV Y
Sbjct: 433 LRVIVDY 439