Pairwise Alignments

Query, 427 a.a., porin from Pseudomonas simiae WCS417

Subject, 444 a.a., outer-membrane porin E from Pseudomonas putida KT2440

 Score =  245 bits (625), Expect = 2e-69
 Identities = 156/433 (36%), Positives = 224/433 (51%), Gaps = 50/433 (11%)

Query: 27  ADFIKDSKADLDLKNYYFNRDYREDAGQSKREEWAQGFILNLKSGFTEGTVGFGVDVVGM 86
           A F++DSK  L  +  YFN D RE     K  E  QGF L+  SGFT+GTVGFGVDV  +
Sbjct: 22  AGFVEDSKLSLSSRTMYFNDDNRESGIDQK--ESGQGFKLDYLSGFTQGTVGFGVDVQAL 79

Query: 87  LGLKLDSSPDRSGSGLLSRDNDATPGKPSYSKRAHDEYSKYGVTGKVRFAQSELRSGYLL 146
            G+ LD      G G     N+      S     HD +++ G   K RF+++E+  G  L
Sbjct: 80  WGIHLDG-----GRGSRPDANNTFFPSDSDGSAVHD-WARIGGNAKARFSKTEVHYGSAL 133

Query: 147 -PDLPTLQPNTSRLFPQTFRGTQVTSTDIAGLALIGGQIDQTKQRESTEYEDMGLTSQSG 205
            P LP L  N  RL PQTF G  + S +I  L +  GQ+     R S+    +   S SG
Sbjct: 134 APMLPILVSNDGRLLPQTFEGGTLQSKEIDNLTINAGQLTHAMGRASSNRTGL---SVSG 190

Query: 206 AYKSTAKSDRFRFAGGDYKLTPGMTLSYHFAQLEDIYQQHFVGLKNSFALGGG-TLKTDI 264
           A++    S++F+FAGGDYKLTP +TL Y+++ LED Y+QHF+G  + F +    + KTD+
Sbjct: 191 AFRD---SNKFQFAGGDYKLTPDLTLQYYYSNLEDFYKQHFLGATHVFKIADNQSFKTDL 247

Query: 265 RYFDADKSG---------------AGLAGKVDNRALSTRAMFSYKGHSLGGGYQEQYGDT 309
           RYFD+   G               A  +G+VDN+  S    ++  GH+L  G+Q+   D 
Sbjct: 248 RYFDSSSDGKNGQTGYAFDNNGGYAKNSGEVDNKTWSAMFTYTLGGHALMLGHQQVGDDG 307

Query: 310 PFTYVD-----------------GTNTYLFSEYQLSNFSQTNERVWHARYDFDFAALGVP 352
            F +++                 G + YLF++  ++ F++  E     +Y +DFAALGVP
Sbjct: 308 GFVWLNQGSVRKDGSTSSLEGNGGASFYLFTDSMINQFARAGENTTFGQYSYDFAALGVP 367

Query: 353 GLTFSTRWAKGDQAQVKGFAGEGREWERDIDLGYVFQSGTLKGVSLRWRNGLSKAN--YL 410
           GL  S  + +GD  + +   G   EWERD  + Y  Q GTLKG+    R G+ + +    
Sbjct: 368 GLKASVSYLRGDDVRNRSGDGTYNEWERDARVDYTLQEGTLKGLGFSLRQGVYRGSGESA 427

Query: 411 RDMNENRVIVGYT 423
            D ++ R IV YT
Sbjct: 428 LDKDQTRFIVNYT 440