Pairwise Alignments

Query, 542 a.a., peptide ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

Subject, 577 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  390 bits (1001), Expect = e-113
 Identities = 236/572 (41%), Positives = 324/572 (56%), Gaps = 55/572 (9%)

Query: 5   PVLLNVEHLKIR-VGEHGPL-AVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLLPLP 62
           P LL+V  L +  +G +GP+ AV  L  ++  GE +ALVGESG GK+  A A + LL  P
Sbjct: 11  PPLLDVRGLDVFFLGSNGPVQAVRGLDLTLQRGETLALVGESGCGKSTTALALLRLLA-P 69

Query: 63  MQVCGGRLDFQGRDLASVSTEALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALKLHT 122
             V  G + F GRD+ ++S   LR +RG  I M+FQEPM SLNP   IG Q+ E L+ H 
Sbjct: 70  GAVLRGSIQFDGRDILALSPAQLREVRGREISMIFQEPMTSLNPVHTIGTQIEETLRRHE 129

Query: 123 DLDPPQIRERCLTMLRRIGIKAAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIADEP 182
            L     R+R + +L  + I    + ++ +PH  SGG RQR+M+A  +  +P LL+ADEP
Sbjct: 130 KLSALAARKRAIELLDLVRIPEPHQRIDDHPHNLSGGQRQRVMIAMAVACKPRLLVADEP 189

Query: 183 TTALDCLAQLDVIELMLELTREQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGSIED 242
           TTALD   Q  ++EL+  L RE   A+L I+HDL LVA++A +V VM  G+ VE+ S   
Sbjct: 190 TTALDVTIQAQILELLDGLRRELDMALLLITHDLGLVAQWADRVAVMYGGEKVEEASTSR 249

Query: 243 ILLAPKAEYTRQLLEALPRRG-----VLAPLP---------------------------- 269
           +  AP   YTR LL A    G     V A LP                            
Sbjct: 250 LFAAPSHAYTRGLLGASLHAGSALHYVDARLPEIQTRLDAATGERSFALHVPEPNSKVRA 309

Query: 270 -----VSNEPLVEVDQVCIEHPGPTTFWGKRQHTRVVHSA---SLVIAPGETLALVGGSG 321
                 + EPL+ V  +  ++P        ++   V+H+    S  I  GET+ LVG SG
Sbjct: 310 LPVRTAAAEPLLSVQDLRTDYP--------KRGGGVLHAVDGVSFDIRAGETVGLVGESG 361

Query: 322 SGKTTLGRSLVGLIKPCAGSIRFKGVDILKAANRT---HRLQCQMIFQDPYSSLNPRMKI 378
            GK+TL R+L+ L+ P +G I F G DI + + +     R + QM+FQDPY+SLNPR  +
Sbjct: 362 CGKSTLSRTLLRLVNPASGRIVFDGTDIAQLSEKALKPWRRRVQMVFQDPYASLNPRRSV 421

Query: 379 GEILAEPLRHEPGLNAAERRERVTQTLKDIGLGEQFVERFPHQLSGGQRQRVAIGRALVR 438
            +I+   L+     + AERR R+   L+ +GL      RFP++ SGGQRQR+ I RALV 
Sbjct: 422 FDIIESVLKVHGVADRAERRNRIAAILERVGLPADAGRRFPNEFSGGQRQRIGIARALVL 481

Query: 439 HPQLVIADEPISALDMTIQKQILELFERLQAQYGFACLFISHDLAAVERIAHRVAVMHQG 498
            P LV+ DEP+SALD+++Q QIL L   L+  +G + LFISHDL+ V  IA RV VM +G
Sbjct: 482 RPSLVVLDEPVSALDVSVQAQILNLLVELKEDFGLSYLFISHDLSVVRYIADRVMVMSKG 541

Query: 499 NVVEVGAREQIFDHPQHPYTRQLLAAASPLEQ 530
            +VE G+   I+D PQHPYTR L+AA    EQ
Sbjct: 542 QIVETGSHRDIWDRPQHPYTRSLIAAVPGAEQ 573