Pairwise Alignments
Query, 542 a.a., peptide ABC transporter ATP-binding protein from Pseudomonas simiae WCS417
Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58
Score = 415 bits (1067), Expect = e-120
Identities = 232/555 (41%), Positives = 334/555 (60%), Gaps = 33/555 (5%)
Query: 2 SANPVLLNVEHL--KIRVGEHGPLAVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLL 59
S +PVL +V++L RV V ++SF IAP E VA+VGESGSGK++ + + + LL
Sbjct: 14 SVSPVL-SVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLL 72
Query: 60 PLPMQVCGGRLDFQGRDLASVSTEALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALK 119
G++ GRDL ++ E +R +RG I M+FQEPM SLNP IG+Q++EAL
Sbjct: 73 DRKTSRIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALT 132
Query: 120 LHTDLDPPQIRERCLTMLRRIGIKAAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIA 179
+H D+ + + +L ++ I A YPHQFSGGMRQR+M+A + +P LLIA
Sbjct: 133 VHQDISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIA 192
Query: 180 DEPTTALDCLAQLDVIELMLELTREQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGS 239
DEPTTALD Q +++L+ +L E+G ++LFI+HD+ +VA A + +VM G VE G+
Sbjct: 193 DEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGT 252
Query: 240 IEDILLAPKAEYTRQLLEALPRRGVL------APLPV------SNEPLVEVDQVCIEHPG 287
+DI + YTR LL A+P+ G + A P+ + P+VE
Sbjct: 253 TDDIFHRGQHPYTRALLSAVPKLGSMRSRLLPARFPIIDIKTGESPPVVETKDTVSGGKT 312
Query: 288 P-------TT--------FWGKRQHTRVVHSASLVIAPGETLALVGGSGSGKTTLGRSLV 332
P TT F K V S +A GETL+LVG SG GK+T GRS+
Sbjct: 313 PILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSIT 372
Query: 333 GLIKPCAGSIRFKGVDILK---AANRTHRLQCQMIFQDPYSSLNPRMKIGEILAEPLRHE 389
LI+P +G++ G ++LK RT R QM+FQDP++SL+PRM +G + EP
Sbjct: 373 RLIEPTSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFMEH 432
Query: 390 PGLNAAERRERVTQTLKDIGLGEQFVERFPHQLSGGQRQRVAIGRALVRHPQLVIADEPI 449
A+ RE+ L+ +GL ++RFPH+ SGGQRQR+AI R+L+ P++++ADE +
Sbjct: 433 RLGQKAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEAV 492
Query: 450 SALDMTIQKQILELFERLQAQYGFACLFISHDLAAVERIAHRVAVMHQGNVVEVGAREQI 509
SALD++I+ Q+ L LQ A LFISHD+A VER++HRVAVM+ G +VE+G R +
Sbjct: 493 SALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAV 552
Query: 510 FDHPQHPYTRQLLAA 524
FD+PQHPYT++L++A
Sbjct: 553 FDNPQHPYTKKLMSA 567
Score = 168 bits (425), Expect = 6e-46
Identities = 100/240 (41%), Positives = 141/240 (58%), Gaps = 12/240 (5%)
Query: 300 VVHSASLVIAPGETLALVGGSGSGKTTLGRSLVGLI----KPCAGSIRFKGVDILKAANR 355
VV + S IAP ET+A+VG SGSGK+ S++ L+ G + G D+L
Sbjct: 37 VVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDRKTSRIEGKVMLGGRDLLALPEE 96
Query: 356 THRL----QCQMIFQDPYSSLNPRMKIGEILAEPLRHEPGLNAAERRERVTQTLKDIGL- 410
R MIFQ+P +SLNP IG+ +AE L ++++ + V + L+ + +
Sbjct: 97 EMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALTVHQDISSSAAKAEVIRLLEKVRIP 156
Query: 411 --GEQFVERFPHQLSGGQRQRVAIGRALVRHPQLVIADEPISALDMTIQKQILELFERLQ 468
+F + +PHQ SGG RQRV I AL P+L+IADEP +ALD+TIQ QIL+L ++LQ
Sbjct: 157 NAASRFGD-YPHQFSGGMRQRVMIAMALASKPKLLIADEPTTALDVTIQGQILDLIKQLQ 215
Query: 469 AQYGFACLFISHDLAAVERIAHRVAVMHQGNVVEVGAREQIFDHPQHPYTRQLLAAASPL 528
+ G + LFI+HD+ V +A R VM +G+VVE G + IF QHPYTR LL+A L
Sbjct: 216 EEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGTTDDIFHRGQHPYTRALLSAVPKL 275
Score = 154 bits (389), Expect = 9e-42
Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 7/237 (2%)
Query: 24 AVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLLPLPMQVCGGRLDFQGRDLASVSTE 83
AV+ +SF +A GE ++LVGESG GK+ R+ L+ + G + G ++ +
Sbjct: 340 AVEKVSFDLAEGETLSLVGESGCGKSTTGRSITRLI----EPTSGNVTLDGYEVLKLDRT 395
Query: 84 ALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALKLHTDLDPPQIRERCLTMLRRIGIK 143
LR +R S+ MVFQ+P SL+P + +G + E H Q RE+ +L ++G+
Sbjct: 396 TLRTMR-RSVQMVFQDPFASLDPRMSVGTAIMEPFMEHRLGQKAQAREKAADLLEKVGL- 453
Query: 144 AAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIADEPTTALDCLAQLDVIELMLELTR 203
+ ++ +PH+FSGG RQRI +A ++L P +++ADE +ALD + V L+L+L +
Sbjct: 454 -SPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEAVSALDVSIKAQVCNLLLDLQQ 512
Query: 204 EQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGSIEDILLAPKAEYTRQLLEALP 260
A LFISHD+++V R +H+V VM G+ VE G + P+ YT++L+ A+P
Sbjct: 513 SLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDNPQHPYTKKLMSAVP 569