Pairwise Alignments

Query, 284 a.a., peptide ABC transporter permease from Pseudomonas simiae WCS417

Subject, 301 a.a., Dipeptide ABC transporter, permease protein DppC (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  200 bits (508), Expect = 4e-56
 Identities = 114/301 (37%), Positives = 169/301 (56%), Gaps = 17/301 (5%)

Query: 1   MSSTIAVPVAAKR-------RRVWAPANALIG---GGLLVVLIALALMGLVW-SPFDPLK 49
           M+ST  V   AK        R  WA  +A  G   G + ++L+ L  M   W +P  P +
Sbjct: 1   MASTQTVSAGAKSTAPPGPLREFWAAFSANRGAVIGLVTIILLMLVAMFAPWIAPHAPNE 60

Query: 50  IDLMSRFQAP------SAAHWLGTDEFGRDVFSRLLIGARTSLWVSLLTVSVAVLAGTLI 103
            +     Q P      S ++ LGTD  GRD+ SRL+ GAR SL + +  V+++V+ G ++
Sbjct: 61  TNSAVFLQPPAWQQGGSTSYLLGTDAIGRDILSRLMYGARLSLSIGVAVVALSVVVGVVL 120

Query: 104 GMLAGYLRGWTDRVLMMFNDALLAFPGILMALGIMAIIGASKYGIVLALGIAYTPSVVRV 163
           G++AG+ RG  +  +M   D +L  P +L+A+ I+AI+G      +LA+ I   P  VR+
Sbjct: 121 GLIAGFFRGVLEIAIMRLMDIVLTLPSLLLAIVIVAILGPGLVNAMLAVAIVVLPHYVRI 180

Query: 164 VRGTVLSLRELEYIEASRVIGNSELYTMLRHIAPNCLAPLCVLATSMFGWALLSESALSF 223
            R  V++    +Y+ A+RV G   L  M R + PNC APL V A+     A+L  +AL F
Sbjct: 181 TRAAVIAEVSRDYVTAARVSGAGTLRLMFREVLPNCAAPLIVQASLGISTAILDAAALGF 240

Query: 224 LGLGVPPPAATWGNMLASSRPYIASAPWLGVFPGLFICLTLLAINLFGDALRDRLDPRMR 283
           LGLG  PP+  WG MLA +R ++  A W+  FPGL I + +LA NL GD LRD LDP+++
Sbjct: 241 LGLGAQPPSPEWGTMLADAREFVLRAWWVVTFPGLAILMAVLAFNLLGDGLRDALDPKLK 300

Query: 284 K 284
           +
Sbjct: 301 R 301