Pairwise Alignments

Query, 284 a.a., peptide ABC transporter permease from Pseudomonas simiae WCS417

Subject, 290 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  204 bits (520), Expect = 1e-57
 Identities = 119/288 (41%), Positives = 170/288 (59%), Gaps = 21/288 (7%)

Query: 14  RRVWAPANALIGGGLLVVLIALALMGLV--W-SPFDPLKID---------LMSRFQAPSA 61
           +R+W   N  + GG+ VVL  LAL+G    W   FDP  +D            +   P  
Sbjct: 5   KRLWR--NTAVRGGV-VVLAVLALLGAFAPWLGTFDPSAMDPSFISVGAGTAGQVTMPDG 61

Query: 62  AH-----WLGTDEFGRDVFSRLLIGARTSLWVSLLTVSVAVLAGTLIGMLAGYLRGWTDR 116
           A      W+G+D  GRDV+SR+L G R S+ V L T  VA+  G L+GMLAGY R   D 
Sbjct: 62  AQFAHTFWMGSDSVGRDVWSRVLYGTRISMTVGLFTAFVAIAFGCLLGMLAGYFRA-VDA 120

Query: 117 VLMMFNDALLAFPGILMALGIMAIIGASKYGIVLALGIAYTPSVVRVVRGTVLSLRELEY 176
           VLM   D ++A P +L+A+ ++A++GAS   ++LA+ +   P V R+VR  V+SLR+  +
Sbjct: 121 VLMRVMDGVMAIPAVLLAITLVAVLGASLPTVILAIAVPEVPRVTRLVRALVMSLRDEPF 180

Query: 177 IEASRVIGNSELYTMLRHIAPNCLAPLCVLATSMFGWALLSESALSFLGLGVPPPAATWG 236
           +EA+R +  ++   + R I PN LAPL V  T +   A+L+E+ LSFLGLG+P    TWG
Sbjct: 181 VEAARALATADATILWRDILPNALAPLIVQGTFIAASAVLTEAILSFLGLGLPSDVPTWG 240

Query: 237 NMLASSRPYIASAPWLGVFPGLFICLTLLAINLFGDALRDRLDPRMRK 284
           N++A  R   + +P   +FP LF+  T+LAIN+ GD LRD LDP+  K
Sbjct: 241 NIMAEGRVQFSQSPGNVLFPALFLVPTVLAINMLGDGLRDVLDPKFSK 288