Pairwise Alignments

Query, 313 a.a., peptide ABC transporter from Pseudomonas simiae WCS417

Subject, 334 a.a., Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  239 bits (611), Expect = 5e-68
 Identities = 132/333 (39%), Positives = 199/333 (59%), Gaps = 21/333 (6%)

Query: 1   MLRFILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGDMA-DPQSLADMRHTLGLDH 59
           M RFIL ++++ VPT + ++++ F LIRL+PGDP   M G+   DP   A++R   G D 
Sbjct: 1   MFRFILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMAGERGIDPARHAELRTAYGFDK 60

Query: 60  SLVTQFLIWFKAVLSFDLGFSISTKQAVLPLILDRFSVSATIVLVAVLFATLIAVPIGLI 119
            ++ Q+ I+   VL  DLG SI T+  V+   L  F  +  + + A+LFA L+ +P G++
Sbjct: 61  PVIVQYGIYIGRVLHGDLGKSIITQDTVMSEFLALFPATVELAVCAILFALLLGLPAGIL 120

Query: 120 AAWKQNSALDLGLVSIATLLLSIPSFWLGLLLLHAFGIQLGWLPVVGYVSFSQ------- 172
           AA ++NS  D G+++ +    S+P FW GLLL+  F +QLGW PV G ++          
Sbjct: 121 AAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYYIEPETG 180

Query: 173 -------------APWQAMSYMVLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAK 219
                        A W A+ +++LP V L  V +  I RM R++ +EVL  +YI  ARAK
Sbjct: 181 FLLIDSLRAGDTGAFWSALHHLILPAVVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAK 240

Query: 220 GLSERAVLWKHALPNAFAPTWTLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDY 279
           GLS   V+  HAL NA  P  T++GL +G L  G  + ET+F+ PG+G+ +++AI  RDY
Sbjct: 241 GLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGRRDY 300

Query: 280 PVLQGCLLLITFIYVLVNLCVDLLYPLFDPRVK 312
           PVLQG +LL+  I +LVNL VD+ Y + +PR++
Sbjct: 301 PVLQGGMLLLGGIVMLVNLLVDVAYGVINPRIR 333