Pairwise Alignments

Query, 313 a.a., peptide ABC transporter from Pseudomonas simiae WCS417

Subject, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  207 bits (527), Expect = 3e-58
 Identities = 112/321 (34%), Positives = 180/321 (56%), Gaps = 9/321 (2%)

Query: 1   MLRFILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGDMADPQSLADMRHTLGLDHS 60
           M+ F+L++L  AV  ++ ++ + F L + + GDP + +LG  A P  + ++R  LGLD  
Sbjct: 1   MIAFVLRRLIQAVIVMIAVAFIAFLLFQYV-GDPVVFLLGQDAKPDQIRELRAALGLDQP 59

Query: 61  LVTQFLIWFKAVLSFDLGFSISTKQAVLPLILDRFSVSATIVLVAVLFATLIAVPIGLIA 120
              QF  +       + G S+     V  LI +RF  +  + LVA + A  I +P+G+  
Sbjct: 60  FFVQFWHFLVNAAQGEFGLSLRQGAKVSRLIGERFPATLELALVAAVLALFIGIPMGVYT 119

Query: 121 AWKQNSALDLGLVSIATLLLSIPSFWLGLLLLHAFGIQLGWLPVVGYVSFSQAPW----- 175
           A ++ + +    ++++ L +S+P+F +G+LL+  F + LGW P  G     +  W     
Sbjct: 120 ALRRGTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPSFGRGETVKFGWWTSGL 179

Query: 176 ---QAMSYMVLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWKHAL 232
                  ++VLP VTL + ++  I R+ RA  +EVLR +YI  ARA+GLS RA+ + HAL
Sbjct: 180 FSVDGWQHIVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFGHAL 239

Query: 233 PNAFAPTWTLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDYPVLQGCLLLITFI 292
            N   P  T+ GL LG L+    + E+VF  PG+G L + A+   D PV+   L LI  I
Sbjct: 240 KNTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFADIPVMAAYLCLIALI 299

Query: 293 YVLVNLCVDLLYPLFDPRVKL 313
           +V++NL VDLLY + DPR+++
Sbjct: 300 FVVINLVVDLLYFVVDPRLRV 320