Pairwise Alignments

Query, 313 a.a., peptide ABC transporter from Pseudomonas simiae WCS417

Subject, 306 a.a., Dipeptide transport system permease protein DppB in protein degradation cluster from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  227 bits (579), Expect = 2e-64
 Identities = 126/312 (40%), Positives = 191/312 (61%), Gaps = 8/312 (2%)

Query: 1   MLRFILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGDMADPQSLADMRHTLGLDHS 60
           ML ++L++L   +PTLL+++V+VF  + L+PGDPA L+ G  AD Q +A +R  LGLD  
Sbjct: 1   MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQP 60

Query: 61  LVTQFLIWFKAVLSFDLGFSISTKQAVLPLILDRFSVSATIVLVAVLFATLIAVPIGLIA 120
           L  QF  +   VL  D G S+ +++ V   I  RF  +  + + ++++A L  + IG+ A
Sbjct: 61  LHVQFWHYITHVLQGDFGTSMVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAA 120

Query: 121 AWKQNSALDLGLVSIATLLLSIPSFWLGLLLLHAFGIQLGWLPVVGYVSFSQAPWQAMSY 180
           A  +N   D   +++A   +S P+F LG+LL+  F + LGWLP VG  S     WQ   +
Sbjct: 121 AVWRNRWPDRLGMTLAVTGISFPAFALGMLLMQIFSVDLGWLPTVGADS-----WQ---H 172

Query: 181 MVLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWKHALPNAFAPTW 240
            +LP +TL       + R  R+S ++VL  +Y+  ARAKG+SE  V+ KH L NA  P  
Sbjct: 173 YILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVV 232

Query: 241 TLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDYPVLQGCLLLITFIYVLVNLCV 300
           T++GL  G LLGG  V+E VF  PG+GRL+VD++  RDYPV+Q  +LL +  ++L+NL V
Sbjct: 233 TMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVV 292

Query: 301 DLLYPLFDPRVK 312
           D+LY   +P ++
Sbjct: 293 DVLYAAINPAIR 304