Pairwise Alignments

Query, 313 a.a., peptide ABC transporter from Pseudomonas simiae WCS417

Subject, 333 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

 Score =  204 bits (518), Expect = 3e-57
 Identities = 112/320 (35%), Positives = 189/320 (59%), Gaps = 10/320 (3%)

Query: 3   RFILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGDM--ADPQSLADMRHTLGLDHS 60
           R +L+ L  AVPT+ +I  + F +++L PGD A  M  +   A  +++AD+R   GLD  
Sbjct: 14  RSLLRNLIQAVPTMFVIVTLGFFVLQLAPGDAADYMAAESGAATQETVADIRRAFGLDLP 73

Query: 61  LVTQFLIWFKAVLSFDLGFSISTKQAVLPLILDRFSVSATIVLVAVLFATLIAVPIGLIA 120
           L+ Q   ++ ++  F LG S      V  LI++R   + T++++A++ A L+ +  G I 
Sbjct: 74  LLDQLANYYTSLAHFSLGISPRYGVPVADLIMERLPGTLTLMVLAIVIALLVGIAAGTIM 133

Query: 121 AWKQNSALDLGLVSIATLLL-SIPSFWLGLLLLHAFGIQLGWLPVVGYVSFSQAP----W 175
           A     A D  ++S+A+LL  S+P+FW+GL+ +  F ++LGWLP  G  +   +     W
Sbjct: 134 ALNATRAADR-ILSVASLLFYSVPTFWIGLIFIIVFSVKLGWLPAGGMKTIGASSGGFGW 192

Query: 176 --QAMSYMVLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWKHALP 233
               +SY +LP  +L L  +    R+ R+S +EV+  +++  A+AKGL+ R V+ +H L 
Sbjct: 193 LIDRVSYALLPATSLALYYMAIYARLTRSSILEVIGQDHVRTAKAKGLAPRQVVLRHVLR 252

Query: 234 NAFAPTWTLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDYPVLQGCLLLITFIY 293
           NA  P  T+ G+ +  +LGG  V+ETVF+ PG+GRL  DA+ AR+Y +L G +L+ + + 
Sbjct: 253 NALIPITTVAGIHVAGILGGAIVIETVFSWPGMGRLAFDAVMAREYTLLLGIMLVSSVLV 312

Query: 294 VLVNLCVDLLYPLFDPRVKL 313
           + VN  VD++    DPR+++
Sbjct: 313 ICVNAIVDIIQAALDPRIEV 332