Pairwise Alignments

Query, 313 a.a., peptide ABC transporter from Pseudomonas simiae WCS417

Subject, 322 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  207 bits (526), Expect = 4e-58
 Identities = 110/320 (34%), Positives = 185/320 (57%), Gaps = 9/320 (2%)

Query: 1   MLRFILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGDMADPQSLADMRHTLGLDHS 60
           ML FI+++L  AV  +L ++++ F + RL  GDP  LM+G+    +  A +R  LGL+ S
Sbjct: 1   MLVFIIKRLGNAVLVMLSVALIAFLIFRLA-GDPVELMVGEQTSQEDRAALRERLGLNDS 59

Query: 61  LVTQFLIWFKAVLSFDLGFSISTKQAVLPLILDRFSVSATIVLVAVLFATLIAVPIGLIA 120
           L TQ+L + K     + G S    Q VLPLI +RF  +  +VLVA + + ++ +P+G++ 
Sbjct: 60  LPTQYLRFVKDAAQGNFGVSYRNGQQVLPLIAERFPATLELVLVATVISLVVGLPLGVLT 119

Query: 121 AWKQNSALDLGLVSIATLLLSIPSFWLGLLLLHAFGIQLGWLPVVGYVSFSQAPW----- 175
           A ++      GL  ++ + +S+PSF +G+LL+  F + LGW P  G     Q  W     
Sbjct: 120 AIRRGKWYTEGLQFLSIVGVSLPSFVVGILLILVFSVSLGWAPAFGRGDVVQLGWWSTGL 179

Query: 176 ---QAMSYMVLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWKHAL 232
                 + ++LP + L+L ++  + R+ RA  +EVLR +++  ARA+G+    + ++HAL
Sbjct: 180 LTSSGRAALILPAIALSLYQITLVMRLVRAEMLEVLRSDFVKFARARGIPRWRIYFRHAL 239

Query: 233 PNAFAPTWTLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDYPVLQGCLLLITFI 292
            N   P  TL  + +G+L+    + ETVF  PG+G L + A+   D PV+   L +I+FI
Sbjct: 240 RNCLMPVVTLTTMNVGSLIAFALITETVFQWPGMGMLFIQAVTFLDIPVMAAYLCIISFI 299

Query: 293 YVLVNLCVDLLYPLFDPRVK 312
           +V++N  VD+ Y + DPR++
Sbjct: 300 FVVLNTFVDIAYAVIDPRLR 319