Pairwise Alignments

Query, 518 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 539 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  553 bits (1426), Expect = e-162
 Identities = 267/510 (52%), Positives = 354/510 (69%), Gaps = 6/510 (1%)

Query: 8   TLCVTLALGAGLAQAETALRVGLNADIRSTEPGVNRDENTDTVMLHIVEGLVAHREDASV 67
           ++C   A GAG       LR+ +N+DIRST+PG NRD+NTD V+LH+ EGLVA RED SV
Sbjct: 33  SVCAQPAAGAG-----QTLRIQINSDIRSTDPGGNRDDNTDNVLLHVGEGLVALREDTSV 87

Query: 68  GPLLAREVKRSDDGMTYTFTLRDRVHFQNGATLTAQDVKWTWERYLNPKTQWRCLAEFDG 127
           GP+LA +V  S DG+TYTFTLRD V FQNGATLTA DV W W+RYL P T WRCL EFDG
Sbjct: 88  GPMLASKVDTSADGLTYTFTLRDGVKFQNGATLTADDVVWNWQRYLKPATNWRCLPEFDG 147

Query: 128 RGGAKITGIDTPDPLTVVFHLDQPSGLFLASMARPDCGGSGILHPDSLAADGSWKAPIGT 187
           +G  K+  ++ P+P TVVF L++ S LFL  MARPDCG S I+H  S+  DG WK P+GT
Sbjct: 148 KGMTKVLSVEAPNPKTVVFKLERASALFLTMMARPDCGSSAIVHRSSVGPDGQWKEPVGT 207

Query: 188 GPFSLGEWKPGQYVVLSRFKDYSPRDDAGPDGFTGKKTALVDAVRFMVIPDPSSAKAALM 247
           GP+ L EWK GQYV L+RF  YS R +   DG TG K A V+ +RF+VIPD ++AKAAL 
Sbjct: 208 GPYKLKEWKRGQYVELTRFDGYSSRAEPR-DGLTGGKKAEVENLRFVVIPDSAAAKAALY 266

Query: 248 SNNIDLLPNVSASDAQELKSTPGVQISFSPIMAICGLLFQTNDPLLKDVRIRQAIAHSLD 307
           S  ID   + S SD  E++    V +  +P+M +  LL QTNDP+LKDVRIR+A+A +LD
Sbjct: 267 SGGIDAFISPSPSDVIEMRKRSDVLVDTTPVMTMVALLLQTNDPVLKDVRIRRALALALD 326

Query: 308 YGQMVTALSNGTSEPNNSAIPQTSPFYSATAKQGYRYDPQEAQRLLKEAGYHGQPIKMIV 367
             ++  +++ G S  NNS +P +SP+Y A    G++ D   A++LL EAGY GQ I+MI 
Sbjct: 327 TPEIARSVTEGLSAVNNSVVPSSSPYYDAVQGSGFKRDLTAAKKLLAEAGYRGQSIRMIA 386

Query: 368 NKRYSQMFDMGLLSQAMAVASGLNIQMETLEWGTQLERYQSGNYQMMAFSYSSRLDPATS 427
           NKRY  ++   +L QAMA  +G+N+++E L+W TQL+RY  G YQ MAF YS+R+DPA +
Sbjct: 387 NKRYEALYSAAVLVQAMASEAGINVELEVLDWATQLDRYTKGQYQSMAFVYSARIDPALN 446

Query: 428 FDSLMGDKTKEPRKVWDNPQAQAVLRDAVRESDTAKRQALFDQLHTMMIHDTPMVIIYNG 487
           ++ + GDK  +PRKVWD+P AQ  L +A+   D A+RQALFD++H  M+ D PM++++N 
Sbjct: 447 YEMVSGDKAAQPRKVWDSPYAQTRLTEAMVSRDKARRQALFDEMHKQMLQDVPMIVLFNA 506

Query: 488 TVAAALRDSVKGFHSWPVSSPRLWGVSLAA 517
           + A A+R +V GF  W  + PR W V LAA
Sbjct: 507 SDATAMRKNVVGFKGWAPAKPRFWNVRLAA 536