Pairwise Alignments

Query, 518 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  112 bits (280), Expect = 3e-29
 Identities = 134/547 (24%), Positives = 220/547 (40%), Gaps = 55/547 (10%)

Query: 4   LLNGTLCVTLALGAGLAQAETALRVGLNADIRSTEPGVNRDENTDTVMLHIVEGLVA-HR 62
           LL  T    L L  G   A+T +     +   +  PG+N    +  V   +   +V   R
Sbjct: 16  LLAPTAIAALTLACGAVSAKTLVYCSEGSP-ENFYPGMNTTGTSFDVTTQVYNTIVEFER 74

Query: 63  EDASVGPLLAREVKRSDDGMTYTFTLRDRVH-------FQNGATLTAQDVKWTWERYLNP 115
               V P LA +   S DG  YTF LR  V        F+      A D  +  ER    
Sbjct: 75  GGTKVVPGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFIFMLERQWKE 134

Query: 116 -----KTQWRCLAEFDGRGGAKITG-IDTPDPLTVVFHLDQPSGLFLASMARPDCGGSGI 169
                K   +  + F+  G  K+   +D  D  TV   L+QP   FLA++A    G    
Sbjct: 135 SDPFFKVTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLAMQYAGIQSK 194

Query: 170 LHPDSLAADGSWKA----PIGTGPFSLGEWKPGQYVVLSRFKDYSPRDDAGPDGFTGKKT 225
            +  ++   G+ +     PIGTGPF L +++          KD   R  A P  + GK  
Sbjct: 195 EYAIAMLKAGTPEKVDQDPIGTGPFYLVQYQ----------KDAVIRFKAFPQYWGGK-- 242

Query: 226 ALVDAVRFMVIPDPSSAKAALMSNNIDLLPNVSASDAQELKSTPGVQISFSPIMAICGLL 285
           A +D + F + PD S   A L      ++P  + +D   ++  P VQ+   P + +  L 
Sbjct: 243 AKIDDLVFAITPDASVRWAKLQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYLS 302

Query: 286 FQTNDPLLKDVRIRQAIAHSLDYGQMVTALSNGTSEPNNSAIPQTSPFYSATAKQGYRYD 345
           + T      DVR+R+AI  +++   ++  +   T     + IP T   Y+   K    YD
Sbjct: 303 YNTTKKPFDDVRVRKAINMAINKKAIIDGVYLTTGVAAKNPIPPTMWSYNDAVKDD-PYD 361

Query: 346 PQEAQRLLKEAGY--------HGQPIKMIVNKRYSQMFDMGLLSQAMAVASGLNIQMETL 397
           P+ A++LL +AGY           P++   N    ++ +   L QA      +  ++++ 
Sbjct: 362 PEAAKKLLAQAGYPDGFSTDLWAMPVQRPYNPNAKRIAE---LMQADLAKINVKAEIKSF 418

Query: 398 EWGTQLERYQSGNYQMMAFSYS-SRLDPATSFDSLMGDKTKEP------RKVWDNPQAQA 450
           EWG   +R Q+G +QM    ++    DP     +L+G  + +        K    P    
Sbjct: 419 EWGEYRKRLQAGEHQMGMLGWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQPYEDL 478

Query: 451 VL--RDAVRESDTAKRQALFDQLHTMMIHDTPMVIIYNGTVAAALRDSVKGFHSWPVSSP 508
           V+  +  V+++D   R AL+ +   +     P   I +      +R  V  F   P    
Sbjct: 479 VVKAKSTVKQAD---RDALYKKAQVIFKEQAPWFTIAHAVQLKPVRKEVVDFKLSPFGRH 535

Query: 509 RLWGVSL 515
             +GV +
Sbjct: 536 TFYGVDI 542