Pairwise Alignments

Query, 518 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 518 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  483 bits (1243), Expect = e-141
 Identities = 247/520 (47%), Positives = 336/520 (64%), Gaps = 5/520 (0%)

Query: 1   MNRLLNGTLCVTLALGAGLAQAETALR--VGLNADIRSTEPGVNRDENTDTVMLHIVEGL 58
           M  L   TL   L  GA    A  A R  V L ADIRS+ PG NRD+NTD+V+L++VEGL
Sbjct: 1   MKHLHGATLIAVLLTGATATAAFAATRIVVALPADIRSSMPGTNRDDNTDSVILNVVEGL 60

Query: 59  VAHREDASVGPLLAREVKRSDDGMTYTFTLRDRVHFQNGATLTAQDVKWTWERYLNPKTQ 118
           V + E   V PLLAR V+ S DG+TYTF LR  V F NG  L++ DV W+W RY++PKT+
Sbjct: 61  VGYGEGGDVKPLLARSVETSADGLTYTFRLRSDVRFHNGDKLSSADVLWSWNRYMDPKTE 120

Query: 119 WRCLAEFDGRGGAKITGIDTPDPLTVVFHLDQPSGLFLASMARPDCGGSGILHPDSLAAD 178
           WRCLAEFDGR   K+  ++ PD  TVV  +++ S LFL ++AR DCG +GIL   S+ AD
Sbjct: 121 WRCLAEFDGRNDLKVLKVEAPDASTVVMRINRRSALFLDTLARTDCGMTGILSKASVKAD 180

Query: 179 GSWKAPIGTGPFSLGEWKPGQYVVLSRFKDYSPRDDAGPDGFTGKKTALVDAVRFMVIPD 238
           G+W  PIGTGPF   +WK G+ + LSRF  Y   + + PDG+ G KT  VD V+  VIPD
Sbjct: 181 GTWDRPIGTGPFEFSDWKRGRGITLSRFAGYKSPEGSKPDGYVGLKTPGVDVVQLQVIPD 240

Query: 239 PSSAKAALMSNNIDLLPNVSASDAQELKSTPGVQISFSPIMAICGLLFQTNDPLLKDVRI 298
           P++ K  + S ++D+   +S SD  E+K+ P +  S     +   LLFQT DPL+ D + 
Sbjct: 241 PATVKLGMASKSVDIAQLLS-SDVVEVKNDPALVTSAESDSSKHALLFQTRDPLMADAKF 299

Query: 299 RQAIAHSLDYGQMVTALSNGTSEPNNSAIPQTSPFYSATAKQGYRYDPQEAQRLLKEAGY 358
           R+A+A +LDY Q+V   S+G S+PNNSA+ + S +  AT ++G++ D  +A+ LLKE+ Y
Sbjct: 300 RRAVAAALDYKQLVDVASDGLSKPNNSAVFERSVYADATQRKGFKTDLTQAKALLKESSY 359

Query: 359 HGQPIKMIVNKRYSQ-MFDMGLLSQAMAVASGLNIQMETLEWGTQLERYQSGNYQMMAFS 417
            GQ IK+I NKR     F + L++QAM  A G+ +++E LEW TQL+RY +GNYQMM+FS
Sbjct: 360 RGQTIKLIANKRSPMPSFQVALVTQAMLQAIGIKVEIEVLEWATQLDRYNAGNYQMMSFS 419

Query: 418 YSSRLDPATSFDSLMGDKTKEPRKVWDNPQAQAVLRDAVRESDTAKRQALFDQLHTMMIH 477
           YS RLDPA S++   GDK ++ RKVWDNP+A A++  A   SD A+RQ +FD+LH M + 
Sbjct: 420 YSGRLDPALSYEQFTGDKARQARKVWDNPEAIALIETARTVSDKAERQKIFDRLHEMALA 479

Query: 478 DTPMVIIYNGTVAAALRDSVKGFHSWPVSSPRLWGVSLAA 517
           D P++ +YNG    +    V GF  W     RLW   + A
Sbjct: 480 DVPLINLYNGLTVWSRGKRVGGFSPWE-GKLRLWTARVGA 518