Pairwise Alignments

Query, 221 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 229 a.a., Octopine transport system permease protein OccM from Azospirillum sp. SherDot2

 Score =  157 bits (396), Expect = 2e-43
 Identities = 92/211 (43%), Positives = 128/211 (60%), Gaps = 9/211 (4%)

Query: 5   FQLALDSAPFLLKGAYYTVILSLGGMFFGLLLGFGLALMRLSRFKLVSWLARVYVSFFRG 64
           +QL  DS P +L G   T+ L +G +  G L+ FG+AL+RLS  ++V  LA  YV  FRG
Sbjct: 3   WQLMWDSLPRMLGGLTLTLELIVGSLALGALVAFGVALLRLSGNRVVETLAAAYVFVFRG 62

Query: 65  TPLLVQLFLIYYGLPQVGIELD---------PIPAAMIGFSLNMAAYACEILRAAIGSIE 115
           TPLLVQ+FL+YYGL Q     D         P   A++  +LN  AY  E+LR AI S+ 
Sbjct: 63  TPLLVQIFLVYYGLGQFEFIRDSILWPFLREPYWCAILALTLNTGAYTSEVLRGAILSVP 122

Query: 116 RGQWEAAASIGMTRAQTLRRAILPQAMRTALPPLGNSFISLVKDTALAATIQVPELFRQA 175
           +GQ EAA + GM+RA   RR +LP A+R  LP  GN  I +VK T+LA+TI + E+   A
Sbjct: 123 QGQVEAARACGMSRALAFRRIVLPVAIRQMLPAYGNEVILMVKATSLASTITLMEVTGIA 182

Query: 176 QLVSARTFEIFTMYLSAALIYWILASILAHL 206
           + + A+TF +F +++ A +IY +L  I   L
Sbjct: 183 RRMIAQTFAVFELFIVAGVIYLVLNFIATRL 213