Pairwise Alignments
Query, 500 a.a., L-arabinose transporter ATP-binding protein from Pseudomonas simiae WCS417
Subject, 517 a.a., D-ribose ABC transporter, ATPase component RbsA (from data) from Pseudomonas simiae WCS417
Score = 360 bits (925), Expect = e-104
Identities = 215/494 (43%), Positives = 299/494 (60%), Gaps = 8/494 (1%)
Query: 4 AALRFDGIGKTFPGVKALDGISFSAHPGQVHALMGENGAGKSTLLKILGGAYIPNSGTLH 63
A L GIGKT+ L I+ + + G+V AL GENGAGKSTL KI+GG P +G +
Sbjct: 8 AVLSVSGIGKTY-AQPVLSDITLTLNRGEVLALTGENGAGKSTLSKIIGGLVTPTTGHMQ 66
Query: 64 IGEQVMAFKSAADSIASGVAVIHQELHLVPEMSVAENLFLGHLPSRFGVVNRGLLRKQAL 123
Q S + GV ++ QEL+L+P ++VAENLFL +LPS G ++R LRK A+
Sbjct: 67 FNGQDFRPGSRTQAEELGVRMVMQELNLLPTLTVAENLFLDNLPSHCGWISRKQLRKAAI 126
Query: 124 ACLKGLA-DEIDPAEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMA 182
+ + D IDP +G L +G +Q+VEIA+ L HV+ DEPT+ L+ARE++ L
Sbjct: 127 EAMAQVGLDAIDPDTLVGSLGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREVEMLFE 186
Query: 183 IIARLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFEDMSALTHDQLVTCMVGRD 242
I RL+ G ++Y+SHR+EE+ R+ + V +DG+ V E M+ +QLVT MVGR+
Sbjct: 187 QITRLQARGVAIIYISHRLEELARVAQRIAVLRDGKLV-CVEPMANYNSEQLVTLMVGRE 245
Query: 243 IQDIYDYRPREHGEVALKVDGLLGPGLREPVSFNVRKGEILGLFGLVGAGRTELFRLLSG 302
+ + D PR G AL V GL VSF VR GEI G+ GL+GAGRTEL RL+ G
Sbjct: 246 LGEHIDLGPRTIGGPALTVKGLTRSDKVRDVSFEVRAGEIYGISGLIGAGRTELLRLIFG 305
Query: 303 LERASAGQLELCGEP---LHLQSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARG 359
+ A +G + L G P + ++SP DA+ G+ L EDRK EG++ S++ NI +
Sbjct: 306 ADLADSGTVAL-GSPAQVVSIRSPVDAVGHGIALITEDRKGEGLLLTQSISANIALGNMP 364
Query: 360 AHSTFGWLLREGWEKGNADQQINAMKVKTPNAAQKIMYLSGGNQQKSILGRWLSMPMKVL 419
S G ++ E A +QI+AM++++ + AQ + LSGGNQQK ++GRWL V+
Sbjct: 365 EISG-GGVVNSRDETALAKRQIDAMRIRSSSPAQLVSELSGGNQQKVVIGRWLERDCSVM 423
Query: 420 LLDEPTRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGIADRILVLCEGALRGEQ 479
L DEPTRGID+GAK +IY ++ L QG A++VVSSDL E+M I DRI VL G L
Sbjct: 424 LFDEPTRGIDVGAKFDIYALLGELTRQGKALVVVSSDLRELMLICDRIGVLSAGRLIETF 483
Query: 480 TREHATESNLLQLA 493
R+ T+ LL A
Sbjct: 484 ERDSWTQDELLAAA 497
Score = 106 bits (264), Expect = 2e-27
Identities = 70/232 (30%), Positives = 123/232 (53%), Gaps = 12/232 (5%)
Query: 24 ISFSAHPGQVHALMGENGAGKSTLLKILGGAYIPNSGTLHIGE--QVMAFKSAADSIASG 81
+SF G+++ + G GAG++ LL+++ GA + +SGT+ +G QV++ +S D++ G
Sbjct: 276 VSFEVRAGEIYGISGLIGAGRTELLRLIFGADLADSGTVALGSPAQVVSIRSPVDAVGHG 335
Query: 82 VAVIHQELH---LVPEMSVAENLFLGHLP--SRFGVVN---RGLLRKQALACLKGLADEI 133
+A+I ++ L+ S++ N+ LG++P S GVVN L K+ + ++ +
Sbjct: 336 IALITEDRKGEGLLLTQSISANIALGNMPEISGGGVVNSRDETALAKRQIDAMRIRSSS- 394
Query: 134 DPAEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAIIARLRDEGKV 193
PA+ + LS G +Q V I + L R V+ FDEPT + + A++ L +GK
Sbjct: 395 -PAQLVSELSGGNQQKVVIGRWLERDCSVMLFDEPTRGIDVGAKFDIYALLGELTRQGKA 453
Query: 194 VLYVSHRMEEVFRICNAVTVFKDGRYVRTFEDMSALTHDQLVTCMVGRDIQD 245
++ VS + E+ IC+ + V GR + TFE S + L G +D
Sbjct: 454 LVVVSSDLRELMLICDRIGVLSAGRLIETFERDSWTQDELLAAAFAGYQKRD 505
Score = 79.0 bits (193), Expect = 4e-19
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 6/226 (2%)
Query: 273 VSFNVRKGEILGLFGLVGAGRTELFRLLSGLERASAGQLELCGEPLHLQSPRDAIAAGVL 332
++ + +GE+L L G GAG++ L +++ GL + G ++ G+ S A GV
Sbjct: 27 ITLTLNRGEVLALTGENGAGKSTLSKIIGGLVTPTTGHMQFNGQDFRPGSRTQAEELGVR 86
Query: 333 LCPEDRKKEGIIPLSSVAENINISARGAHSTFGWLLREGWEKGNADQQINAMKVKTPNAA 392
+ ++ ++P +VAEN+ + +H GW+ R+ K A + + + + +
Sbjct: 87 MVMQELN---LLPTLTVAENLFLDNLPSHC--GWISRKQLRKA-AIEAMAQVGLDAIDPD 140
Query: 393 QKIMYLSGGNQQKSILGRWLSMPMKVLLLDEPTRGIDIGAKAEIYQIIHNLAAQGIAVIV 452
+ L G+QQ + R L VL+LDEPT + +++ I L A+G+A+I
Sbjct: 141 TLVGSLGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREVEMLFEQITRLQARGVAIIY 200
Query: 453 VSSDLMEVMGIADRILVLCEGALRGEQTREHATESNLLQLALPRSV 498
+S L E+ +A RI VL +G L + + L+ L + R +
Sbjct: 201 ISHRLEELARVAQRIAVLRDGKLVCVEPMANYNSEQLVTLMVGREL 246