Pairwise Alignments

Query, 500 a.a., L-arabinose transporter ATP-binding protein from Pseudomonas simiae WCS417

Subject, 510 a.a., D-ribose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  361 bits (926), Expect = e-104
 Identities = 201/477 (42%), Positives = 297/477 (62%), Gaps = 5/477 (1%)

Query: 6   LRFDGIGKTFPGVKALDGISFSAHPGQVHALMGENGAGKSTLLKILGGAYIPN-SGTLHI 64
           L   GI KTF G++ L  +    +PG++HALMGENGAGKSTL+KIL GAY  +  G + I
Sbjct: 7   LEMQGISKTFNGLRVLKTVGLKVYPGEIHALMGENGAGKSTLMKILSGAYQADPGGEIRI 66

Query: 65  GEQVMAFKSAADSIASGVAVIHQELHLVPEMSVAENLFLGHLPSRFGVVNRGLLRKQALA 124
             Q++     A + A G+AVI+QEL L P +SVAEN++LG    R   ++R  +    + 
Sbjct: 67  AGQLIPTFDPATAKALGIAVIYQELSLCPNLSVAENIYLGRELRRGWTIDRKGMEAGCIE 126

Query: 125 CLKGLADEIDPAEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAII 184
            L+ L  E  PA ++  LS+ +RQLVEIA+AL   A ++  DEPT+ LS+RE DRL A+I
Sbjct: 127 VLQRLGAEFTPATRVSSLSIAERQLVEIARALHAHAKILVMDEPTTPLSSRETDRLFALI 186

Query: 185 ARLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFEDMSALTHDQLVTCMVGRDIQ 244
            +LR +G  ++Y+SHRM E++ + + V+V +DG Y+       AL+ + LV  MVGRD+ 
Sbjct: 187 KQLRSQGLAIIYISHRMAEIYALSDRVSVLRDGHYIGEL-TRDALSAEALVKMMVGRDLS 245

Query: 245 DIY--DYRPREHGEVALKVDGLLGPGLREPVSFNVRKGEILGLFGLVGAGRTELFRLLSG 302
             Y  ++     G V ++V  +         SF++  GE+LG+ GLVGAGRTEL RL+  
Sbjct: 246 GFYKKEHAAYNPGNVVMRVRDMADGKRVRHCSFDLHAGEVLGIAGLVGAGRTELARLIFA 305

Query: 303 LERASAGQLELCGEPL-HLQSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGAH 361
            +  ++G LE+ G+ +  L++P DAI AGV+   EDRK +G+    SVA+NIN+ A    
Sbjct: 306 ADPRTSGTLEVVGKAVTPLRTPADAIRAGVVYLTEDRKAQGLFLDMSVADNINVCACVPD 365

Query: 362 STFGWLLREGWEKGNADQQINAMKVKTPNAAQKIMYLSGGNQQKSILGRWLSMPMKVLLL 421
           +  G +L        ++  I ++ ++  +       LSGGNQQK +L R L +   VL+L
Sbjct: 366 AHAGGVLDRDHALQRSNDAIKSLSIRVASGKVNAGALSGGNQQKVLLARLLEVKPHVLIL 425

Query: 422 DEPTRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGIADRILVLCEGALRGE 478
           DEPTRG+DIG+K+EIY+II+ LA  GI ++V+SS+L E++G  DR+L++ EG L  E
Sbjct: 426 DEPTRGVDIGSKSEIYRIINQLAQAGIGIVVISSELPEIIGTCDRVLIMREGQLVAE 482



 Score = 92.8 bits (229), Expect = 3e-23
 Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 12/236 (5%)

Query: 268 GLR--EPVSFNVRKGEILGLFGLVGAGRTELFRLLSGLERAS-AGQLELCGEPLHLQSPR 324
           GLR  + V   V  GEI  L G  GAG++ L ++LSG  +A   G++ + G+ +    P 
Sbjct: 18  GLRVLKTVGLKVYPGEIHALMGENGAGKSTLMKILSGAYQADPGGEIRIAGQLIPTFDPA 77

Query: 325 DAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGAHSTFGWLL-REGWEKGNADQQINA 383
            A A G+ +  ++     + P  SVAENI +   G     GW + R+G E G  +     
Sbjct: 78  TAKALGIAVIYQELS---LCPNLSVAENIYL---GRELRRGWTIDRKGMEAGCIEVLQRL 131

Query: 384 MKVKTPNAAQKIMYLSGGNQQKSILGRWLSMPMKVLLLDEPTRGIDIGAKAEIYQIIHNL 443
               TP  A ++  LS   +Q   + R L    K+L++DEPT  +       ++ +I  L
Sbjct: 132 GAEFTP--ATRVSSLSIAERQLVEIARALHAHAKILVMDEPTTPLSSRETDRLFALIKQL 189

Query: 444 AAQGIAVIVVSSDLMEVMGIADRILVLCEGALRGEQTREHATESNLLQLALPRSVA 499
            +QG+A+I +S  + E+  ++DR+ VL +G   GE TR+  +   L+++ + R ++
Sbjct: 190 RSQGLAIIYISHRMAEIYALSDRVSVLRDGHYIGELTRDALSAEALVKMMVGRDLS 245