Pairwise Alignments

Query, 500 a.a., L-arabinose transporter ATP-binding protein from Pseudomonas simiae WCS417

Subject, 524 a.a., ribose ABC transporter - ATP-binding subunit from Pseudomonas putida KT2440

 Score =  371 bits (952), Expect = e-107
 Identities = 222/493 (45%), Positives = 308/493 (62%), Gaps = 10/493 (2%)

Query: 6   LRFDGIGKTFPGVKALDGISFSAHPGQVHALMGENGAGKSTLLKILGGAYIPNSGTLHIG 65
           L   G+GKT+     L  +S S   G+V AL GENGAGKSTL K++ G  +P +G +   
Sbjct: 17  LAASGLGKTY-AQPVLGEVSLSLRAGEVLALTGENGAGKSTLSKLISGLEVPTTGHMTYR 75

Query: 66  EQVMAFKSAADSIASGVAVIHQELHLVPEMSVAENLFLGHLPSRFGVVNRGLLRKQALAC 125
            Q  A  S  ++   GV ++ QEL+L+P ++VAENLFL +LPSRFG ++   LR+ A A 
Sbjct: 76  GQAYAPGSRGEAERLGVRMVMQELNLLPTLTVAENLFLDNLPSRFGWISHKRLRQLATAA 135

Query: 126 LKGLA-DEIDPAEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAII 184
           +  +  D IDP   +G L +G +Q+VEIA+ L    HV+  DEPT+ L+ARE+  L   I
Sbjct: 136 MARVGLDAIDPDTPVGELGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREVALLFTQI 195

Query: 185 ARLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFEDMSALTHDQLVTCMVGRDIQ 244
            RLR  G  ++Y+SHR+EE+ R+   + V +DG+ V   E +   +  +LV  MVGR++ 
Sbjct: 196 ERLRARGVAIVYISHRLEELQRVAQRIVVLRDGKLVCD-EPIQRYSSAELVNLMVGRELG 254

Query: 245 DIYDYRPREHGEVALKVDGLL-GPGLREPVSFNVRKGEILGLFGLVGAGRTELFRLLSGL 303
           +  D   R+ G   LKVD L  G  +RE VSF VR GEI G+ GL+GAGRTEL RL+ G 
Sbjct: 255 EHIDLGRRQLGAPLLKVDKLCRGDKVRE-VSFEVRAGEIFGISGLIGAGRTELLRLIYGA 313

Query: 304 ERASAGQLELCGEP---LHLQSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGA 360
           +RA +G + L G+P   + + SP+ A+ AG+ L  EDRK EG++   S++ NI +   GA
Sbjct: 314 DRADSGGIAL-GQPPQAVSIDSPKAAVRAGIALITEDRKGEGLLLTQSISANIALGNLGA 372

Query: 361 HSTFGWLLREGWEKGNADQQINAMKVKTPNAAQKIMYLSGGNQQKSILGRWLSMPMKVLL 420
            S  G L  E  EK  A++QI AM++++  A Q +  LSGGNQQK ++GRWL    +VLL
Sbjct: 373 VSRAGVLDSEA-EKALAERQIQAMRIRSAGAQQVVGELSGGNQQKVVIGRWLERDCQVLL 431

Query: 421 LDEPTRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGIADRILVLCEGALRGEQT 480
            DEPTRGID+GAK +IY ++  LA QG A++VVSSDL E+M I DRI VL  G L     
Sbjct: 432 FDEPTRGIDVGAKFDIYGLLAELARQGKALVVVSSDLRELMLICDRIAVLSAGRLIDTFA 491

Query: 481 REHATESNLLQLA 493
           R+H ++  LL  A
Sbjct: 492 RDHWSQDQLLAAA 504



 Score = 91.7 bits (226), Expect = 6e-23
 Identities = 78/256 (30%), Positives = 127/256 (49%), Gaps = 19/256 (7%)

Query: 251 PREHGEVALKVDGLLGPGLREPV----SFNVRKGEILGLFGLVGAGRTELFRLLSGLERA 306
           P    EV L   GL G    +PV    S ++R GE+L L G  GAG++ L +L+SGLE  
Sbjct: 9   PALANEVVLAASGL-GKTYAQPVLGEVSLSLRAGEVLALTGENGAGKSTLSKLISGLEVP 67

Query: 307 SAGQLELCGEPLHLQSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGAHSTFGW 366
           + G +   G+     S  +A   GV +  ++     ++P  +VAEN+ +      S FGW
Sbjct: 68  TTGHMTYRGQAYAPGSRGEAERLGVRMVMQELN---LLPTLTVAENLFLD--NLPSRFGW 122

Query: 367 L----LREGWEKGNADQQINAMKVKTPNAAQKIMYLSGGNQQKSILGRWLSMPMKVLLLD 422
           +    LR+      A   ++A+   TP     +  L  G+QQ   + R L     VL+LD
Sbjct: 123 ISHKRLRQLATAAMARVGLDAIDPDTP-----VGELGIGHQQMVEIARNLIGDCHVLILD 177

Query: 423 EPTRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGIADRILVLCEGALRGEQTRE 482
           EPT  +     A ++  I  L A+G+A++ +S  L E+  +A RI+VL +G L  ++  +
Sbjct: 178 EPTAMLTAREVALLFTQIERLRARGVAIVYISHRLEELQRVAQRIVVLRDGKLVCDEPIQ 237

Query: 483 HATESNLLQLALPRSV 498
             + + L+ L + R +
Sbjct: 238 RYSSAELVNLMVGREL 253