Pairwise Alignments

Query, 440 a.a., L-arabinose transporter (from data) from Pseudomonas simiae WCS417

Subject, 434 a.a., major facilitator transporter from Pseudomonas simiae WCS417

 Score =  320 bits (820), Expect = 6e-92
 Identities = 164/414 (39%), Positives = 251/414 (60%), Gaps = 6/414 (1%)

Query: 1   MSQELRLIRRITLKLIPFLILLYLIAYVDRSAVGFAKLHMGADVGIGDAAYGLGAGLFFI 60
           +++  R  R +T +L+P L++ YL A++DR  +GFAK+ M +D+   D  YG GAGLFFI
Sbjct: 12  LAEHDRTHRSVTWRLMPLLLVCYLFAHLDRINIGFAKMQMSSDLHFSDTVYGFGAGLFFI 71

Query: 61  GYFLFEIPSNLMLDRFGARRWFARIMITWGAITIGMAFVQGPHSFYVMRFLLGAAEAGFF 120
            Y LF +PSN+ LDR G RRW A +M+ WG ++ GM +V+    FYV+RFLLG AEAGFF
Sbjct: 72  AYALFGVPSNMALDRVGPRRWIASLMVVWGLLSTGMLWVESARGFYVLRFLLGMAEAGFF 131

Query: 121 PGVLYYITQWFPVRHRGKILGLFILSQPIAMMITGPVSGGLLGMDGMLG-LHGWQWLFIV 179
           PG+L ++ +W+P R R ++  LF ++ P+A ++ GP+SG +L     +G L GWQW+F++
Sbjct: 132 PGILVFLNRWYPARRRAQVTALFAIAVPMAGVLGGPLSGAILEHFHDVGSLRGWQWMFLI 191

Query: 180 IGTPAILLTWPVLRYLPDGPKQVTWMSEDEKAWLTGELAKDLQAYGQTRHGNPLHALKDK 239
            G P +LL   VL++LPDG   V W++ ++K  L  +L  + Q    T  G     L+D 
Sbjct: 192 EGLPVVLLGLVVLKWLPDGFDSVHWLTAEQKRQLQTQLRSEEQRKTITSFGG---ILRDP 248

Query: 240 RVLLLALFYLPVTLSIYGLGLWLPTLIKQFG-GSDLTTGFISAVPYIFGIIGLLIIPRSS 298
           +V LL   Y  V L++  L  W+PTLI   G G D   G +SA+PY+ G   ++   RSS
Sbjct: 249 QVWLLVAVYFAVMLAVNTLAFWMPTLIHGAGIGRDSQVGLLSALPYLAGCFFMIGCGRSS 308

Query: 299 DRLNDRYGHLAVLYVLGAIGLFFSAWLT-VPLLQMAALCLAAFAMFSCTAVFWTLPGRFF 357
           DR  +R  HL V  ++ A+G+  +      PLL M  L +A     +   +FW LP  F 
Sbjct: 309 DRHRERRWHLCVPLLMAAVGIAVAGLAPGNPLLVMGGLIVAGMGASAALPMFWQLPPAFL 368

Query: 358 AGASAAAGIALINSVGNLGGYIGPFVIGALKEYTGNLASGLYFLSGVMVFGLVL 411
           +  + AAGIA+I+S G++  ++ P++IG +++ T + +  LY L+  +  G +L
Sbjct: 369 SNTTQAAGIAMISSFGSIAAFLAPYLIGWMRDATQSASLALYVLAVFIALGGLL 422