Pairwise Alignments

Query, 440 a.a., L-arabinose transporter (from data) from Pseudomonas simiae WCS417

Subject, 436 a.a., MFS transporter permease from Pseudomonas simiae WCS417

 Score =  321 bits (822), Expect = 3e-92
 Identities = 163/418 (38%), Positives = 245/418 (58%), Gaps = 4/418 (0%)

Query: 7   LIRRITLKLIPFLILLYLIAYVDRSAVGFAKLHMGADVGIGDAAYGLGAGLFFIGYFLFE 66
           + +RITL+LIPF+ + YL  Y+DR  VGFAKL M   +   +  YGLGAG+FFIGY L  
Sbjct: 18  IYKRITLRLIPFIFICYLFNYLDRVNVGFAKLQMLDALKFSETVYGLGAGIFFIGYVLCG 77

Query: 67  IPSNLMLDRFGARRWFARIMITWGAITIGMAFVQGPHSFYVMRFLLGAAEAGFFPGVLYY 126
           +PSNL L +FG RRW A +MI WG ++  + FV  P  FY +R   GAAEAGFFPGV+ Y
Sbjct: 78  VPSNLALTKFGPRRWIALMMIVWGTLSTCLLFVTTPTHFYTLRLFTGAAEAGFFPGVVLY 137

Query: 127 ITQWFPVRHRGKILGLFILSQPIAMMITGPVSGGLLG--MDGMLGLHGWQWLFIVIGTPA 184
           ++QWFP   RG+I+ LF+ + P++ ++  P SG +L     G  GL GWQW+F++ G P 
Sbjct: 138 LSQWFPTFRRGRIMALFMSAIPVSGLLGSPFSGWILNHFAAGQGGLAGWQWMFLLQGIPT 197

Query: 185 ILLTWPVLRYLPDGPKQVTWMSEDEKAWLTGELAKDLQAYGQTRHGNPLHALKDKRVLLL 244
           ++L       L D      W+   E+A L  + A DL    +T   +     K+  +   
Sbjct: 198 VVLGALAYFLLSDSFANAKWLKPHERAVLEADQATDLANKPKTTTDSLAEVFKNPAIWAF 257

Query: 245 ALFYLPVTLSIYGLGLWLPTLIKQFGGSD-LTTGFISAVPYIFGIIGLLIIPRSSDRLND 303
            L Y  +   +Y +  WLP++IK  G SD L  G++SA+PY+   + +L++ RS+D   +
Sbjct: 258 GLIYFCIQSGVYAINFWLPSIIKNLGFSDNLVIGWLSAIPYLLAAVFMLLVGRSADLRKE 317

Query: 304 RYGHLAVLYVLGAIGLFFSA-WLTVPLLQMAALCLAAFAMFSCTAVFWTLPGRFFAGASA 362
           R  HL V  ++GAIGL  +  + T P + +  L +A     +   +FW +P    +  +A
Sbjct: 318 RRWHLVVPMLMGAIGLVIAVNFATTPAIAILGLTIATMGALTGLPMFWPVPTAMLSAGAA 377

Query: 363 AAGIALINSVGNLGGYIGPFVIGALKEYTGNLASGLYFLSGVMVFGLVLTFVVYRLLE 420
           A G+ALINS+G + G++ P+++G +K+ TG+    LY L+ V+V G VL   + R L+
Sbjct: 378 AGGLALINSMGQMAGFLSPYIVGFVKDATGSTDMALYLLAAVIVAGSVLALRMTRTLK 435