Pairwise Alignments

Query, 440 a.a., L-arabinose transporter (from data) from Pseudomonas simiae WCS417

Subject, 436 a.a., MFS transporter permease from Pseudomonas simiae WCS417

 Score =  324 bits (831), Expect = 3e-93
 Identities = 170/412 (41%), Positives = 248/412 (60%), Gaps = 4/412 (0%)

Query: 7   LIRRITLKLIPFLILLYLIAYVDRSAVGFAKLHMGADVGIGDAAYGLGAGLFFIGYFLFE 66
           L  +IT KLIPFL   YL AY+DR  +GFAKL M   +   + A+GLGAGLFF+GY LFE
Sbjct: 19  LYHKITWKLIPFLCFCYLAAYLDRINIGFAKLQMLDQLQFSETAFGLGAGLFFVGYILFE 78

Query: 67  IPSNLMLDRFGARRWFARIMITWGAITIGMAFVQGPHSFYVMRFLLGAAEAGFFPGVLYY 126
           +PSNL+L+R GA+ W ARIMITWG ++     V     FY++RFLLGAAEAGF PGVLYY
Sbjct: 79  VPSNLVLERVGAKIWIARIMITWGLLSACTMLVTSTTQFYILRFLLGAAEAGFLPGVLYY 138

Query: 127 ITQWFPVRHRGKILGLFILSQPIAMMITGPVSGGLLG-MDGMLGLHGWQWLFIVIGTPAI 185
           +T WFP   RG+I+ LF++  P++ +I GP+SG ++G  D M GL GWQWLF++   P++
Sbjct: 139 LTTWFPTHRRGRIIALFMIGLPLSSVIGGPLSGWIMGHFDHMGGLRGWQWLFLIEAVPSV 198

Query: 186 LLTWPVLRYLPDGPKQVTWMSEDEKAWLTGELAKDLQAYGQTRHGNPLHALKDKRVLLLA 245
           LL       LP+  +Q  W+S++EKA L  EL KD  A G     +      + +V +L 
Sbjct: 199 LLGVLTFWALPNTYQQAKWLSDEEKALLDTELRKD-DAEGSASKHSFRDGFFNLKVWMLG 257

Query: 246 LFYLPVTLSIYGLGLWLPTLIKQFGGSD-LTTGFISAVPYIFGIIGLLIIPRSSDRLNDR 304
                + LS Y +G W+PT I+  G +D    G ++A+P +  ++G+L+I  SSD+  +R
Sbjct: 258 GIDFSILLSAYAMGFWMPTFIRNAGVTDTFHIGVLTALPSVAALLGMLLIGASSDKHRER 317

Query: 305 YGHLAVLYVLGAIGLFFSAWLTVPLLQMAAL-CLAAFAMFSCTAVFWTLPGRFFAGASAA 363
             H+ V + +GA  +  S + T  ++    L  +A+ A+     VF++LP  F  G +AA
Sbjct: 318 RWHIIVPFFIGAAAMATSTFFTHNVVATVVLFAIASAAIIGAVPVFFSLPATFLKGTAAA 377

Query: 364 AGIALINSVGNLGGYIGPFVIGALKEYTGNLASGLYFLSGVMVFGLVLTFVV 415
            G AL  SV N+ G +   ++G   + TG+ A  L+F +G ++    L   +
Sbjct: 378 TGFALACSVANIAGLVSNSLMGVAIDVTGSSAGALWFFAGCLILSSFLVIAL 429