Pairwise Alignments

Query, 647 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 647 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  769 bits (1985), Expect = 0.0
 Identities = 402/647 (62%), Positives = 484/647 (74%), Gaps = 2/647 (0%)

Query: 1   MNIKQKLTWAFAAIACVPVILVAVLVVLNLREGALANFLDSSGREIRQIDNGMKQFFDGI 60
           M+IKQKLTWAFA IA +P++LVA LVV+NLR  A   FLDSS REIRQ+ N M  FF GI
Sbjct: 1   MSIKQKLTWAFAVIAGLPIVLVATLVVINLRGEARDGFLDSSSREIRQVSNAMNIFFQGI 60

Query: 61  SQNVDYVAKDPRVVAA-KDLKSYAGADAAQIPLTPTNKELLEIFDQFAKSHPSTAYLSLG 119
           +QNV+Y+A  P V A   +L  Y  A  +   L     ++L+   + A SHP+ AYLS G
Sbjct: 61  NQNVEYMASQPMVAATGSELNKYMSATPSY-ELGEQASKILDFMTRLANSHPAYAYLSYG 119

Query: 120 LKDGGYASWPDDTKLNNYDPRVRPWYQAAIAAPGKTVRTGAYYWAPDDVTLIGTVHTVAD 179
           + DGGY  WP   K  NYDPR RPWYQ A+A PGKT+RTGAYYWA DD  L+ TV TVA+
Sbjct: 120 VNDGGYTGWPAGQKFVNYDPRTRPWYQLAMANPGKTMRTGAYYWAADDAVLVSTVRTVAN 179

Query: 180 ATGNILGVVGLDVSLKQLTELVRNIKLGDSGYLMLVEGNGNVLVDPSDAKHNFKPLADLG 239
             GN  GVV +DVSLK LTE+V+ IKLG+SGYLMLVE NGNV+VDP DA HNFK L   G
Sbjct: 180 QLGNPGGVVNIDVSLKGLTEIVKQIKLGESGYLMLVESNGNVMVDPRDATHNFKQLGSFG 239

Query: 240 PNYAELAKRGDGVTQIEIDGVAYMANMVSSKDLGWRFIGLIKRDEVMAGATRLTWLIAAI 299
             YA+LAK G G+ ++E++GV YMAN+   + LGW FIGLI++ EVM   TRLTWLI  I
Sbjct: 240 DGYAKLAKAGKGLVEVELNGVHYMANVYPDQQLGWTFIGLIEQSEVMQTTTRLTWLIGVI 299

Query: 300 AAVLALVFAIVGASFASVIVRPIRGVADGLQEIAEGEGDLTRQLKVQGKDETASLAGWFN 359
           A VLA +FA+VGA+FA +IVRPI  V +GL++IA+GEGDLTR L+++G+DETA LA WFN
Sbjct: 300 AVVLAALFAVVGAAFAKLIVRPINSVTNGLEDIAQGEGDLTRNLEIRGRDETAQLANWFN 359

Query: 360 QFLSMIAQLVQRIGNASSDLQSAAADTREVAHNMNQAAGRQREAVELVSTAFNEMVATAN 419
           QFL  I  L+Q IG A+S + S ++ +  V+ +M +AAGRQREAV++VSTAF+EMVATAN
Sbjct: 360 QFLGAIRSLIQHIGTAASKILSTSSSSTRVSSDMAEAAGRQREAVDMVSTAFHEMVATAN 419

Query: 420 EVARSCSAAATSADEGYRDVHDGQQHIGEATGSVLKLSEDLQRSTQTMQQLEQDSKNINT 479
           EVARSCS AA SAD G +   +GQQ I  A  SV +LS ++++S Q++QQLE+DS  I +
Sbjct: 420 EVARSCSQAAQSADSGQQQAREGQQQIDAAVHSVDRLSHEIEQSAQSIQQLERDSNAIQS 479

Query: 480 ILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGEIDSLLGN 539
           IL TIRSIAEQTNLLALNAAIEAARAG+QGRGFAVVADEVRALA+RTADST EID LLGN
Sbjct: 480 ILGTIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAKRTADSTAEIDGLLGN 539

Query: 540 LARRTQEVTQQMQGSLLVSHTSVERIQQARDSFDKIRGSVDSIRDQNTQIATAAEEQHQV 599
           LA RT EV +QM  SL VS  SV RI  ARDSF +IR SVD IRD NTQIATAAEEQHQV
Sbjct: 540 LASRTAEVAEQMHASLEVSQQSVSRIGLARDSFGQIRESVDVIRDMNTQIATAAEEQHQV 599

Query: 600 AEEINRHIAQIHADAQLVEGFAHSAQTGSGRLTDISGQLKGLVGRFK 646
           AE+INRHI+QIH DAQLV   A +A+  S  L  +S +L  LV RF+
Sbjct: 600 AEDINRHISQIHGDAQLVAELAQAARQDSESLAGLSNELDTLVRRFR 646



 Score = 38.5 bits (88), Expect = 1e-06
 Identities = 36/176 (20%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 322 IRGVADGLQEIAEGEGDLTRQLKVQGKDETASLAGWFNQFLSMIAQLVQRIGNASSD--- 378
           I+ +   ++ IAE    L     ++     A+ AG   +  +++A  V+ +   ++D   
Sbjct: 477 IQSILGTIRSIAEQTNLLALNAAIE-----AARAGEQGRGFAVVADEVRALAKRTADSTA 531

Query: 379 -----LQSAAADTREVAHNMNQAAGRQREAVELVSTA---FNEMVATANEVARSCSAAAT 430
                L + A+ T EVA  M+ +    +++V  +  A   F ++  + + +    +  AT
Sbjct: 532 EIDGLLGNLASRTAEVAEQMHASLEVSQQSVSRIGLARDSFGQIRESVDVIRDMNTQIAT 591

Query: 431 SADEGYRDVHDGQQHIGEATGSVLKLSEDLQRSTQTMQQLEQDSKNINTILDTIRS 486
           +A+E ++   D  +HI +  G    ++E  Q + Q  + L   S  ++T++   R+
Sbjct: 592 AAEEQHQVAEDINRHISQIHGDAQLVAELAQAARQDSESLAGLSNELDTLVRRFRT 647