Pairwise Alignments

Query, 421 a.a., porin from Pseudomonas simiae WCS417

Subject, 449 a.a., Outer membrane low permeability porin, OprB family from Sphingobium sp. HT1-2

 Score =  147 bits (372), Expect = 5e-40
 Identities = 105/400 (26%), Positives = 181/400 (45%), Gaps = 34/400 (8%)

Query: 42  LDAQGIRFTGEYSGETAYNAHGGQHRSARYSQNLKLGVQFDLGKLYGFNNGDRIQVTLND 101
           L A+G+  +  Y+GE A N  GG  R A ++  + +G + DL ++ G + G  +   + +
Sbjct: 48  LAAEGVTLSLSYTGEAATNVSGGLRRDATHAGQVYVGAELDLDRMIGID-GAMLHFAVTN 106

Query: 102 RRGNSASEDLVGNRLPIQENYGGLYTRLTELSYERTLFTPALNVKLGYMAMGNDLGGLDS 161
           R G + S   +GN   +QE YG   T L  L+++++     L+++ G      ++  L+S
Sbjct: 107 RHGKNLSAMAIGNNTSVQEIYGTQNTHLAILTWQQSFLDGRLDIEAGRSQA--NIHFLNS 164

Query: 162 GILCNFMNAGFCGHPLNMSGGSGWTNYPNAHLGARVKYDFAPNWQLRVAAFNVDPQSNGN 221
            + C+F     CG+P  +   S +T +P +   A  K    P   L    + V P     
Sbjct: 165 PLYCHFQTNSACGNPTFVFKNSNFTYFPASSWMAHAKLHVTPQVMLHAGVYEVSPDRKRA 224

Query: 222 SSRAWHLGPKHTTGTVVPIELVYKHAGS---LPGEYKLGYYYDSSD-------------- 264
           S   ++   K+ TG ++P EL +    +   LPG Y LG ++D  D              
Sbjct: 225 SDHGFNFSTKNATGVIIPWELSFSRDAADDRLPGHYILGGWFDRGDYADPLRDDQGGIAI 284

Query: 265 -VKRIGSNKEVSGRGGHYLLIDQAVWASESSAGRVLHAFGQYSAASEAASPFSKWYGAGV 323
              R  + +  +GR G Y   DQ +   + ++ R +  FG            S++ G G+
Sbjct: 285 LTGRAAATR--NGRSGLYARFDQQLTRPDPASPRGVSIFGVAMTNLSGQVEESRYLGMGI 342

Query: 324 VLYKPFEGRPRDTLALGYGRAVPNPRSRE--VQEL-AALNAGNDYPNLNNAEQLIELSYG 380
           V    F GR +DT+    G A+ + R  +  +Q +  A  A     ++   + ++EL+YG
Sbjct: 343 VQTGTFAGRDQDTI----GFAINDQRFSDLAIQRMNTARVAAGGRADIRRHQYMMELAYG 398

Query: 381 YQATPWLTLRPDVQYIIEPGAFSG----ENIDNALVLGLQ 416
            Q  P + L P++QYI+ P          NI NA +LG +
Sbjct: 399 LQVNPAIRLSPNLQYILHPDQTGAPDRTRNIRNAFILGFK 438