Pairwise Alignments

Query, 333 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score = 70.5 bits (171), Expect = 5e-17
 Identities = 80/294 (27%), Positives = 130/294 (44%), Gaps = 22/294 (7%)

Query: 8   LIATALALLALPAMAD-SAHPKIGFSIDDLRLERWSRDRD----YFVAAAEKLDAKVFVQ 62
           L A + AL    A AD +A PK+G  +  L  E +   +D    Y    A   D      
Sbjct: 15  LAAASAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQKEHAADFDMITNGI 74

Query: 63  SADANEQKQISQIENLISRGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLI----- 117
             + +   QI  +  +I   V+ IVI P ++  L   + +A  AGIKVV+ D  +     
Sbjct: 75  KNETDTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGIKVVNIDNRLDPDVL 134

Query: 118 --LNADIDAYISFDNEKVGEMQASGVLQAAPKGNYF-LLGGAPTDNNAKVLREGQMKVLQ 174
              N DI  ++  DN K  ++    + +    G+   ++ G PT  NA+    G     +
Sbjct: 135 KSKNLDI-PFVGPDNRKGSKLVGDYLAKQLASGDKVGIIEGVPTTTNAQQRTAG----YK 189

Query: 175 PAIDKGDIKVVGQQWVKEWNPTEALSIVENALTRNNNKIDAIVASNDATAGGAIQALAAQ 234
            A+D   +K+V  Q    W   +    V +A+      + A++A ND  A GA+ A+ A 
Sbjct: 190 DAMDAAGMKIVSTQ-SGNWEIDQGQK-VASAMLSEYPDLKALLAGNDNMALGAVSAVRAA 247

Query: 235 KLAGKVPISGQDADLAAIKRVI-DGTQTMTVYKPLKLIASEAAKLSVQLARNEK 287
             AGKV + G D ++ AIK ++ DG    T  +     A    + +++L + EK
Sbjct: 248 GKAGKVLVVGYD-NIEAIKPMLQDGRVLATADQAAAQQAVFGIQNALKLVKGEK 300