Pairwise Alignments

Query, 333 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 340 a.a., D-xylose ABC transporter, substrate-binding protein XylF from Variovorax sp. SCN45

 Score =  249 bits (636), Expect = 7e-71
 Identities = 135/328 (41%), Positives = 205/328 (62%), Gaps = 7/328 (2%)

Query: 5   KRTLIATALALLALPAMADSAHPKIGFSIDDLRLERWSRDRDYFVAAAEKLDAKVFVQSA 64
           K TL A A  L A+ AMA +    +G S  + + ERW  D     A  EKL AK     A
Sbjct: 4   KHTLAAMAFGLTAVGAMAQTV---VGVSWSNFQEERWKTDEAAIKAELEKLGAKYISADA 60

Query: 65  DANEQKQISQIENLISRGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLILNADIDA 124
             + +KQ+  IE L+S+G   ++++  +   +  AV +A +  + VV+YDRLI    +  
Sbjct: 61  GGSPEKQLGDIEGLMSKGAKALIVLAMDKDAILPAVTKATRQKVPVVAYDRLIEAPGV-F 119

Query: 125 YISFDNEKVGEMQASGVLQAAPKGNYFLLGGAPTDNNAKVLREGQMKVLQPAIDKGDIKV 184
           YI+FDN +VG M+A  VL+  PKGNY ++ G+P+D NA  LR GQ +VL  +I KGDIK+
Sbjct: 120 YITFDNVEVGRMEAREVLKVKPKGNYVIIKGSPSDPNADFLRAGQQEVLDASIKKGDIKI 179

Query: 185 VGQQWVKEWNPTEALSIVENALTRNNNKIDAIVASNDATAGGAIQALAAQKLAGKVPISG 244
           VG ++ + W P  A   +E  LT+N NK+DA+VA+ND TAGGA+ AL A+ L G +P+SG
Sbjct: 180 VGDEYTEGWKPEVAQKNMEQILTKNGNKVDAVVAANDGTAGGAVAALTAKGLRG-IPVSG 238

Query: 245 QDADLAAIKRVIDGTQTMTVYKPLKLIASEAAKLSVQLARNEKPTYSSQYDNGSKKV--D 302
           QDAD AA+ R+  GTQT T++K  + +  EAA  ++ L++ +    ++ +++G KKV   
Sbjct: 239 QDADFAALNRIALGTQTATIFKDSRELGREAAIAAIALSQGKPVDKAATWNSGPKKVSLQ 298

Query: 303 TILLTPTPLTKANIDLLEKDGFYTKEQI 330
           + LLTP P+T+ N+D++ K G+  K+++
Sbjct: 299 SRLLTPVPVTRDNLDVVVKAGWIKKDEL 326