Pairwise Alignments

Query, 333 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 356 a.a., L-arabinose ABC transporter, substrate-binding protein AraF from Variovorax sp. SCN45

 Score =  139 bits (349), Expect = 1e-37
 Identities = 108/353 (30%), Positives = 178/353 (50%), Gaps = 31/353 (8%)

Query: 5   KRTLIATALALLAL-PAMADSAHPKIGFSIDDLRLERWSRD----RDYFVAAAEKLDAKV 59
           K TL   ALA++   P +       I  S+      RW  D    + YF     K D   
Sbjct: 7   KATLAGVALAVVGFTPLVHAQDKGLIAISMPTKSSARWIADGANMQKYFKDKGYKTD--- 63

Query: 60  FVQSADANEQKQISQIENLISRGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLILN 119
            +Q AD +   Q++QIEN++++G  V+VI   + T L++ + +A   G+KV++YDRLI  
Sbjct: 64  -LQYADDDIPNQLAQIENMVTKGSKVLVIAAIDGTTLSDVLQKAADKGVKVIAYDRLIKG 122

Query: 120 A-DIDAYISFDNEKVGEMQASGVLQA----APKG--NYFLLGGAPTDNNAKVLREGQMKV 172
           + ++D Y +FDN +VG +QA  +  A    + KG  N  L GG+P DNNA     G M V
Sbjct: 123 SKNVDYYATFDNFQVGVLQAQSIEAALGLKSGKGPFNIELFGGSPDDNNAFFFYNGAMSV 182

Query: 173 LQPAIDKGDIKVVGQQW------VKEWNPTEALSIVENALTR--NNNKIDAIVASNDATA 224
           L P I  G + V  +Q          W+   A + ++N L+     +++DA+++  D  +
Sbjct: 183 LDPYIKSGKLVVRSKQMGMDKVGTLRWDGAVAQARMDNLLSAYYTKDRVDAVLSPYDGLS 242

Query: 225 GGAIQALAAQKL-AGKVP---ISGQDADLAAIKRVIDGTQTMTVYKPLKLIASEAAKLSV 280
            G + +L      +G  P   +SGQDA++ +IK ++   QT TV+K  + +A     +  
Sbjct: 243 IGILSSLKGVGYGSGSQPMPVVSGQDAEVPSIKSILRKEQTSTVFKDTRELAKVTVSMVD 302

Query: 281 QLARNEKPTY--SSQYDNGSKKVDTILLTPTPLTKANIDLLEKD-GFYTKEQI 330
            +   ++P    +  Y+NG K V + LL P  +  +N  ++  D G+Y + QI
Sbjct: 303 AMLSGKQPEVNDTKTYNNGIKVVPSYLLKPVSVDASNWKVVLIDSGYYKESQI 355