Pairwise Alignments

Query, 333 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 320 a.a., ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score = 80.5 bits (197), Expect = 5e-20
 Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 21/270 (7%)

Query: 1   MKSFKRTLIATALALLALPAMADSAHPKIGFSID-DLRLERWSRDRDYFVAAAEK----- 54
           M +F R L  TA+A  A  ++   A  K+   +        +    +Y+   A+K     
Sbjct: 1   MTTFTRRLALTAVAAAAFASLPALAAEKVNLGVSIPAATHSFMGGINYWANQAKKDLEKE 60

Query: 55  -LDAKVFVQSADANEQKQISQIENLIS-RGVDVIVIVPFNATVLTNAVAEAKKAGIKVVS 112
             D K+ +++A AN  +Q +Q+++L +   ++ +V+ PF +  LT  VA+ K  G  V  
Sbjct: 61  HKDLKITIKTA-ANAPEQANQLQDLSTVTKINALVVFPFESAALTKPVAQVKAKGAYVTV 119

Query: 113 YDRLILNADI-DAYISFDNEKVGEMQASGVL-QAAPKGNYFLLGGAPTDNNAKVLREGQM 170
            DR + +    DAY++ DN   G++ A  ++ Q   KGN   L G  T      L   +M
Sbjct: 120 VDRGLTDTSAQDAYVAGDNTAFGKIPAEYIVKQLNGKGNVVALRGIAT-----TLDNERM 174

Query: 171 KVLQPAIDKG--DIKVVGQQWVKEWNPTEALSIVENALTRNNNKIDAIVASNDATAGGAI 228
                A+ KG  DIK++  ++   WN  +A  + ++ LTR  N IDAI A++D  A G +
Sbjct: 175 DAFN-AVLKGSPDIKLLDAKYAN-WNRDDAFKVTQDYLTRFKN-IDAIWAADDDMAVGVL 231

Query: 229 QALAAQKLAGKVPISGQDADLAAIKRVIDG 258
           +A++  K      + G       +K ++DG
Sbjct: 232 KAISQAKRDDIKIVFGGAGAKDMVKTIMDG 261