Pairwise Alignments

Query, 333 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 311 a.a., D-allose transporter subunit (NCBI) from Escherichia coli BW25113

 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 75/258 (29%), Positives = 117/258 (45%), Gaps = 15/258 (5%)

Query: 59  VFVQSADANEQKQISQIENLISRGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLI- 117
           +F   ++ + Q Q+   E+L ++    I   P ++  L   VA A K GI +V+ D  I 
Sbjct: 59  IFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKID 118

Query: 118 ------LNADIDAYISFDNEKVGEMQASGVLQ--AAPKGNYFLLGGAPTDNNAKVLREGQ 169
                    +++A+++ DN  VG   AS ++    A  G   ++ G   + + +  R G 
Sbjct: 119 MDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGA 178

Query: 170 MKVLQPAIDKGDIKVVGQQWVKEWNPTEALSIVENALTRNNNKIDAIVASNDATAGGAIQ 229
            +  + A     IK+V  Q   +W+  +AL +  N L RN N I AI  +ND  A G  Q
Sbjct: 179 TEAFKKA---SQIKLVASQ-PADWDRIKALDVATNVLQRNPN-IKAIYCANDTMAMGVAQ 233

Query: 230 ALAAQKLAGKVPISGQDADLAAIKRVIDGTQTMTVYKPLKLIASEAAKLSVQLARNEKPT 289
           A+A     GKV + G D    A K V  G  T TV +    I +   KL V   ++ K  
Sbjct: 234 AVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVI 293

Query: 290 YSSQYDNGSKKVDTILLT 307
              +     K VD+IL+T
Sbjct: 294 PLDKAPE-FKLVDSILVT 310