Pairwise Alignments

Query, 518 a.a., xylose transporter from Pseudomonas simiae WCS417

Subject, 500 a.a., L-arabinose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  346 bits (888), Expect = e-99
 Identities = 204/508 (40%), Positives = 321/508 (63%), Gaps = 18/508 (3%)

Query: 4   MSDYLLQMNGIVKSFGGVNALNGIDIRVRPGECVGLCGENGAGKSTLMKVLSAVYPYGTW 63
           M+   L+ +GI K+F GV AL+GI     PG+   L GENGAGKSTL+K+L   Y   + 
Sbjct: 1   MTAAALRFDGIGKTFPGVKALDGISFSAHPGQVHALMGENGAGKSTLLKILGGAYIPNS- 59

Query: 64  EGEILWDGQPLKAQSISETEAAGIVIIHQELTLVPDLSVAENIFMGHELTLPG--GRMNY 121
            G +    Q +  +S +++ A+G+ +IHQEL LVP++SVAEN+F+GH   LP   G +N 
Sbjct: 60  -GTLHIGEQVMAFKSAADSIASGVAVIHQELHLVPEMSVAENLFLGH---LPSRFGVVNR 115

Query: 122 PAMFHRAEALMRELKVPDMNVALPVSQYGGGYQQLVEIAKALNKQARLLILDEPSSALTR 181
             +  +A A ++ L   +++ A  + +   G +QLVEIAKAL++ A ++  DEP+S+L+ 
Sbjct: 116 GLLRKQALACLKGL-ADEIDPAEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSA 174

Query: 182 SEIEVLLDIIRGLKAKGVACVYISHKLDEVAAVCDTIAVIRDGKHIATTA-MADMDIAKI 240
            EI+ L+ II  L+ +G   +Y+SH+++EV  +C+ + V +DG+++ T   M+ +   ++
Sbjct: 175 REIDRLMAIIARLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFEDMSALTHDQL 234

Query: 241 ITQMVGREMSNLYPTEPHAVGEVIFEARNVTCHDVDNPKRKRVDDVSFVLKRGEILGIAG 300
           +T MVGR++ ++Y   P   GEV  +   +    +  P       VSF +++GEILG+ G
Sbjct: 235 VTCMVGRDIQDIYDYRPREHGEVALKVDGLLGPGLREP-------VSFNVRKGEILGLFG 287

Query: 301 LVGAGRTELVSALFGAYPGRYSAEVWLDGQVIDTRTPLKSIRAGLCMVPEDRKRQGIIPD 360
           LVGAGRTEL   L G      + ++ L G+ +  ++P  +I AG+ + PEDRK++GIIP 
Sbjct: 288 LVGAGRTELFRLLSGLERAS-AGQLELCGEPLHLQSPRDAIAAGVLLCPEDRKKEGIIPL 346

Query: 361 LGVGQNITLTVLDSYAHRTRIDAEA-ELGSIDQQIARMHLKTASTFLPITSLSGGNQQKA 419
             V +NI ++   +++    +  E  E G+ DQQI  M +KT +    I  LSGGNQQK+
Sbjct: 347 SSVAENINISARGAHSTFGWLLREGWEKGNADQQINAMKVKTPNAAQKIMYLSGGNQQKS 406

Query: 420 VLAKMLMAKPKVLILDEPTRGVDVGAKYEIYKLMGALAAEGVAIIMVSSELAEVLGVSDR 479
           +L + L    KVL+LDEPTRG+D+GAK EIY+++  LAA+G+A+I+VSS+L EV+G++DR
Sbjct: 407 ILGRWLSMPMKVLLLDEPTRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGIADR 466

Query: 480 VLVIGDGQLRGDFINEGLTQEQVLAAAL 507
           +LV+ +G LRG+   E  T+  +L  AL
Sbjct: 467 ILVLCEGALRGEQTREHATESNLLQLAL 494