Pairwise Alignments

Query, 518 a.a., xylose transporter from Pseudomonas simiae WCS417

Subject, 499 a.a., hypothetical protein from Escherichia coli BL21

 Score =  349 bits (895), Expect = e-100
 Identities = 213/510 (41%), Positives = 309/510 (60%), Gaps = 22/510 (4%)

Query: 4   MSDYLLQMNGIVKSFGGVNALNGIDIRVRPGECVGLCGENGAGKSTLMKVLSAVYPYGTW 63
           MS+  LQM  I K F GV ALN +   +R GE   L GENGAGKSTLMK+LS VY     
Sbjct: 1   MSETFLQMKHITKRFPGVLALNDVQFSLRRGEVHALLGENGAGKSTLMKILSGVYQPD-- 58

Query: 64  EGEILWDGQPLKAQSISETEAAGIVIIHQELTLVPDLSVAENIFMGHELTLPGG-RMNYP 122
           EGEI+++ +P+        +  GI IIHQE  L P+L+V ENIF+G E       R++  
Sbjct: 59  EGEIIFEDKPVSFSDPLSAQNVGITIIHQEFNLFPELTVEENIFIGREFCKKNRWRLDEK 118

Query: 123 AMFHRAEALMRELKV---PDMNVA-LPVSQYGGGYQQLVEIAKALNKQARLLILDEPSSA 178
                   ++++L +   PD  VA L V+Q     QQ+VEIAKA++  AR+LI+DEP++A
Sbjct: 119 QQRQATIEILQKLNLAIKPDTLVADLTVAQ-----QQMVEIAKAISVNARILIMDEPTAA 173

Query: 179 LTRSEIEVLLDIIRGLKAKGVACVYISHKLDEVAAVCDTIAVIRDGKHIATTAMADMDIA 238
           LT +EIE L  + R LK +G   VYISH+L+E+A + D   V+RDG++I+T     + I+
Sbjct: 174 LTETEIESLFRVTRLLKEQGTGIVYISHRLEELALIADRATVMRDGQYISTVDYECVKIS 233

Query: 239 KIITQMVGREMSNLYPTEPHAVGEV-IFEARNVTCHDVDNPKRKRVDDVSFVLKRGEILG 297
            +I  MVGR++ N+YP        + + E   +T   V N       D++F L RGEILG
Sbjct: 234 DLIAMMVGRDLGNIYPRREALQQRIPVLEVNGLTRKGVLN-------DINFTLYRGEILG 286

Query: 298 IAGLVGAGRTELVSALFGAYPGRYSAEVWLDGQVIDTRTPLKSIRAGLCMVPEDRKRQGI 357
            AGL+GAGRTEL  A+FGA     S  + L+G+    +    +I+ G+  + EDRK++G+
Sbjct: 287 FAGLMGAGRTELARAIFGA-DSIDSGTLKLNGKETVIKDISDAIQQGISYLTEDRKKEGL 345

Query: 358 IPDLGVGQNITLTVLDSYAHRT-RIDAEAELGSIDQQIARMHLKTASTFLPITSLSGGNQ 416
             +L V +NI L     Y+ R   +D+     + ++Q+  + +KT +      +LSGGNQ
Sbjct: 346 ALNLSVERNIMLGNYPEYSDRFGNVDSRRCQQTSEEQVKALRIKTPNLEQAALNLSGGNQ 405

Query: 417 QKAVLAKMLMAKPKVLILDEPTRGVDVGAKYEIYKLMGALAAEGVAIIMVSSELAEVLGV 476
           QK ++A+ +     +LI DEPTRG+DVGAK EIY+LM  L A+G +IIM+SSEL EVLG+
Sbjct: 406 QKIIIARWVCKDTDILIFDEPTRGIDVGAKLEIYELMNRLVAKGKSIIMISSELPEVLGM 465

Query: 477 SDRVLVIGDGQLRGDFINEGLTQEQVLAAA 506
            DR+LV+  G++ G+   +  TQE+++  A
Sbjct: 466 CDRILVMRSGRITGELSAKEATQEKIMQYA 495