Pairwise Alignments

Query, 378 a.a., D-xylose ABC transporter permease from Pseudomonas simiae WCS417

Subject, 340 a.a., ABC transporter, membrane spanning protein (ribose) from Agrobacterium fabrum C58

 Score =  189 bits (480), Expect = 1e-52
 Identities = 123/359 (34%), Positives = 182/359 (50%), Gaps = 47/359 (13%)

Query: 12  KMLALVIAVAVIWVFFSWQTEGGFLTPRNLSNLLRQMSITGILACGMVLVIISGEIDLSV 71
           K  AL    A++ VF +  T   F T  N   +  Q++   +L  G   VII+G IDLSV
Sbjct: 23  KFAALGSLFALVAVFSA--TSNAFFTVNNGMTIALQVTSIALLGIGATCVIITGGIDLSV 80

Query: 72  GSLLGLLGGLAAILDVVYHIPLLANLSLVALCGLMIGLANGYMTAYLRIPSFIVGLGGML 131
           GS+L L G +AA+      +P+   + L  L G + GL NG +    ++P FI  LG ML
Sbjct: 81  GSVLALAGVVAALAVKELGMPVPIGMLLGILTGSLCGLINGLLVTRFKLPPFIATLGMML 140

Query: 132 AFRGILLGITGGTTIAPVSPSLVYVGQGYLPHSVGIGLGVLLFSLTVFLTWKQRRNRALH 191
             RG+ L ITG   ++ +  S   +G G L                              
Sbjct: 141 IARGVALQITGARAVSGLGESFGELGNGAL------------------------------ 170

Query: 192 GLAAHSLVRDLVRVAVIGAVLAGFVTTLNSYDGIPVPVLLLLVLLGVFSYVTSQTVFGRR 251
                       R+  IG    GF   +  + GIP PV+L++V+    S++ ++++ GR 
Sbjct: 171 -----------FRIVTIGD--DGFPNVV--FPGIPYPVILMVVIALAVSFMLNRSILGRH 215

Query: 252 VYAVGSNMEATRLSGINVQAVKLWIFGIMGVMCALAGLVNTARLAAGSPSAGNMGELDAI 311
           +YAVGSN +A RLSG+NV  V  + + + G +  L G V  +RL    P+ G M ELDAI
Sbjct: 216 IYAVGSNADAARLSGVNVARVTNFTYILSGTLAGLTGCVLMSRLVTAQPNEGVMYELDAI 275

Query: 312 AACFIGGTSMRGGSGTVYGALLGALVITSLDNGMSMLDVDSYWQMIVKGSILVLAVWVD 370
           A+  IGGTS+ GG GT+ G  +GA VI  L NG++M  V ++ Q I+ G ++++ VW+D
Sbjct: 276 ASAVIGGTSLIGGVGTISGTAIGAFVIGILRNGLNMNGVSAFTQQIIIGLVILVTVWID 334