Pairwise Alignments

Query, 208 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 208 a.a., DNA-binding protein from Pseudomonas simiae WCS417

 Score = 74.3 bits (181), Expect = 1e-18
 Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 11/210 (5%)

Query: 2   NTAEQDK-VMQNFRAMADAIATLFFPHAEAVLHDLRSQKVDYIA--NNLSKRSIGDDSAL 58
           NT+  D  ++     +A+ ++  F P  E VLHDLR  +   +A  NNLS R+ GD +  
Sbjct: 3   NTSPNDTHLISQLEQIAEGLSKTFSPFCEVVLHDLRDPQHSILAIHNNLSGRAAGDPTTE 62

Query: 59  EDM--LSDDVSDVNIGPYEKLNWDGQKIRSLSTVLHDHKGRRLAVLCINLNISLFENAKA 116
             +  ++D      I  Y+    DG++++S S  +    G  +A LC+N+++SLF   + 
Sbjct: 63  LGLARIADPEYPQVIANYQNQFSDGRQVKSTSIGIKGAGGEYVAALCMNVDLSLFRGLQG 122

Query: 117 ALDLF--LSPSKLIPQPDSLFRDDWQERINTFLHAWMRERQLSLNLLTRDHKRELVLALH 174
            L+ F  +S  KLI   D    D  + RI+ F          +   L    +R L+  L 
Sbjct: 123 MLEQFGSVSGDKLIESLDPSGADVIRARIDQF----AARLATTPRALKAADRRVLMQELK 178

Query: 175 AEGAFKGKSASNYVANVLGMGRATVYKHLK 204
             G    + A   VA+ LG+ RA VY + K
Sbjct: 179 DSGCLDIRRAMETVASHLGVSRAAVYTYAK 208