Pairwise Alignments

Query, 469 a.a., GABA permease from Pseudomonas simiae WCS417

Subject, 472 a.a., L-alanine and D-alanine permease (from data) from Pseudomonas simiae WCS417

 Score =  298 bits (763), Expect = 3e-85
 Identities = 163/460 (35%), Positives = 261/460 (56%), Gaps = 10/460 (2%)

Query: 11  GQLAQGFKPRHVTMLSIAGIIGAGLFVGSGHAIAAAGPAVLLAYLFSGTLVVLVMRMLGE 70
           G L +    RH+ ++++   IG GLF+GS  AI  AGPA++L+Y+  G  ++++MR LGE
Sbjct: 16  GPLKRELGERHIRLMALGACIGVGLFLGSAKAIEMAGPAIMLSYIIGGLAILVIMRALGE 75

Query: 71  MAVANPDTGSFSTYADQAIGRWAGFTIGWLYWWFWVLVIPIEALAAGHILNQWFPQIDAW 130
           MAV NP  GSFS YA   +G  AGF  GW YW+ W++    E  A    +  WFP    W
Sbjct: 76  MAVHNPVAGSFSRYAQDYLGPLAGFLTGWNYWFLWLVTCVAEITAVAVYMGVWFPDTPRW 135

Query: 131 LFALLSIFLLVVTNLFSVSKYGEFEFWFAMAKVIAIIAFI--GLGFAVLMGWIPEREVSG 188
           ++AL ++  +   NL +V  +GEFEFWFA+ K++ IIA +  G+G  +  G+  +    G
Sbjct: 136 IWALAALISMGSINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGI-IAFGFGNDGVALG 194

Query: 189 LSRLMEEHGGFAPNGLSAVVGAFITIMFSFIGTEAVTIAAAESSNPAQNIARATRSVMWR 248
           +S L   HGGF PNG+  V+ +   +MF+++G E + + A E+ NP + I  A  SV WR
Sbjct: 195 ISNLW-AHGGFMPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPSAIGSVFWR 253

Query: 249 IGVFYLLSIFVVISVVPWNDPLLASVGS-YQRALELMNIPHAKLLVDVVVLIAVASCMNS 307
           I +FY+ ++FV++S+ PWN+  + + GS +    E + I  A  +++ VV+ A  S  N 
Sbjct: 254 ILLFYVGALFVILSIYPWNE--IGTQGSPFVMTFERLGIKTAAGIINFVVITAALSSCNG 311

Query: 308 SIYIASRMLFSLGKRGDAPALMKKTSAASVPRAAVIASTILGAGVTLFSYFAPAGLFQFL 367
            I+   RML+SL + G APA   KTS+  VPR A++ S        L +Y  P  +F ++
Sbjct: 312 GIFSTGRMLYSLAQNGQAPATFAKTSSNGVPRKALLLSIFALLLGVLLNYLVPEKVFVWV 371

Query: 368 LASSGAIALLVYLVIAVSQLRMRKILR-QRNVTLTFQMWLFPWLTWLVIAFICAALTVML 426
            + +   A+  +L+I ++QL+ RK L       L ++MWL+P  ++L +AF+   + +M 
Sbjct: 372 TSIATFGAIWTWLMILLAQLKFRKSLSPAEQAGLKYRMWLYPVSSYLALAFLLLVVGLMA 431

Query: 427 VTPEHRFEVSSTIGLALVISLVGLLTARQPERTQKTVGAA 466
             P+ R  ++  +G   ++ L  L    + + TQ   G A
Sbjct: 432 YFPDTR--IALYVGPVFLVLLTVLFYVFKLQPTQVAQGEA 469