Pairwise Alignments

Query, 486 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 308 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 44.3 bits (103), Expect = 6e-09
 Identities = 76/322 (23%), Positives = 127/322 (39%), Gaps = 46/322 (14%)

Query: 185 KTLTFKTLADTYLEERKEDVKASSMRSMKACCDI-LVGVLGEMDMATHSRADLVGVRETL 243
           K +T   +   +  ++K+ VK SS  +     +  ++   G     + SR      R+ L
Sbjct: 3   KQMTISEVITLWKTDKKQYVKKSSFSAYVLLIENHILPEFGNECQLSESRVQDFIFRK-L 61

Query: 244 KEGRKPVTVNKIVTQMTTILNWAVDNGHIKQAFGKKLQLTKGAESGRIP-FSQEQIAKLI 302
            +G    TV  ++  +  IL + V N  ++ +    ++     E   I   S+ Q  K++
Sbjct: 62  DQGLSQKTVKDMLIVLKMILKFGVKNQWLRDS-PLDIRFPTEREKQHIEVLSKSQQKKIM 120

Query: 303 QCANSLPADDWKRWAVTLGVISGARIGEIHQLTTVD----------------IVEIDNVL 346
           Q         ++   + + + +G RIGE+  L+  D                I  I+N +
Sbjct: 121 QHIQQ--HFTFRNLGIYICLSTGLRIGEVCALSWEDVDTDMGIIRVSKSIQRIYTIENEI 178

Query: 347 VMDINTNDGKGTKNKFSIRKVPLV-DIYGVDLEALKAFAEASNGKLF----------KRT 395
                  D   TKN  SIR++P+  D+    L  LK   +  N   F           RT
Sbjct: 179 RKTELILDTPKTKN--SIREIPISRDL----LRLLKPIKKIMNPAFFVLTNEQKPTEPRT 232

Query: 396 LGSFYGVLNKFIRETLGIQTKGGLSFHSLRHFVAGSLKAAEVPLGTAQEILGHSSGSITF 455
             S+Y    KF+ E        GL FH LRH  A     +     T   +LGHS+ S T 
Sbjct: 233 YRSYY---QKFMEEL----NMTGLKFHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTL 285

Query: 456 DLYGSGRSVQMQRMAEALKVAL 477
           +LY      Q ++  + + +AL
Sbjct: 286 NLYVHPNMEQKKKAIDKMAMAL 307