Pairwise Alignments

Query, 607 a.a., excinuclease ABC subunit C from Pseudomonas simiae WCS417

Subject, 605 a.a., Excinuclease ABC subunit C from Alteromonas macleodii MIT1002

 Score =  573 bits (1478), Expect = e-168
 Identities = 296/603 (49%), Positives = 410/603 (67%), Gaps = 4/603 (0%)

Query: 5   FDPSAFLSTCSGRPGVYRMFDSEARLLYVGKAKNLKNRLASYFRKSGLAPKTAALVARIA 64
           FD +AFL   + +PGVYRM++S+  ++YVGKAKNLK R++SYFR +    KT +LV++IA
Sbjct: 4   FDSAAFLKNLTSQPGVYRMYNSQEEVIYVGKAKNLKKRVSSYFRSNLDNAKTRSLVSQIA 63

Query: 65  QVETTITANETEALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGNFPRLSIHRGAKKQ 124
            ++ T+  +ETEA LLE   IK+++P YN+++RDDKSYP++FLSD   PRLS HRG +K+
Sbjct: 64  NMDVTVVNSETEAFLLENNFIKKYKPRYNVVMRDDKSYPFIFLSDHEHPRLSFHRGPQKK 123

Query: 125 KGKYFGPYPSAGAIRESLSLLQKTFFVRQCEDSFYKNRTRPCLQYQIKRCKAPCV-GLVE 183
           KG+YFGPYPSA ++RESL  +Q+ F VRQCEDS+Y+ R+RPCLQYQ++RC APCV G V 
Sbjct: 124 KGEYFGPYPSAWSVRESLRSMQRIFPVRQCEDSYYRARSRPCLQYQMQRCSAPCVEGYVS 183

Query: 184 PAEYAEDVRHSVMFLEGRSNALTDELSGAMEQAASTLDFERAAELRDQISLLRRVQDQQS 243
             EY E V  + +FL+G++  +   L   ME A+  L+FE AA  RDQI+ LR+VQ++Q 
Sbjct: 184 DEEYKEQVNFARLFLKGKNQQVIGGLVEKMEAASEALNFEAAARYRDQINALRKVQERQW 243

Query: 244 MEGGTGDVDVIAAFVNPGGACVHLISVRGGRVLGSKNFFPQTGIDEDVAEVMAAFLGQYY 303
           + G   ++DV         AC+ ++ +R G++LGSK +FP+     D  EV  +F  Q+Y
Sbjct: 244 VAGTQDEMDVFGFAFKGNMACIQVMFIREGQLLGSKAYFPKVPNTADEQEVFESFFLQFY 303

Query: 304 VSSPERDLPSELIVNVVHEDFPTLIEAIHELRGRELDISHRVRGTRARWQQLAVTNAEQA 363
           ++   + +P ++++     D   + + +    G ++      R  + ++ QLA +NA+ A
Sbjct: 304 LAG-NKVIPKQIVLGNTLTDEDAIADVLASEAGHKVQFFKGAREEKRKYLQLAQSNAQTA 362

Query: 364 LSARLANRQHVAARFDALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSD 423
           L A+ + ++ V AR+  L   L +D P QR+EC+DISH+SG+ TVASCVVF  EGP KSD
Sbjct: 363 LDAQYSQQKSVFARYLDLEAALEVDTPIQRMECFDISHTSGQQTVASCVVFKREGPHKSD 422

Query: 424 YRRYNIEGVTAGDDYAAMHQALTRRFSKLKDGEGKLPDILLVDGGKGQLSMARDVLNELA 483
           YRRYNIEG+T GDDYAAM QAL RR+  +K+ + K+PD+LL+DGGKGQL+ A     +  
Sbjct: 423 YRRYNIEGITPGDDYAAMAQALKRRYKSVKEVQ-KIPDLLLIDGGKGQLAQAEAFFEDWP 481

Query: 484 VPDL-ILLGVAKGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAITGHR 542
                +LLGVAKG TRK G ETL L  +     +   SP LHLIQ IRDE+HRFAITGHR
Sbjct: 482 HDKKPMLLGVAKGTTRKPGLETLILAGSHQVLPMDSHSPGLHLIQHIRDESHRFAITGHR 541

Query: 543 ARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAELIYA 602
            RR K + TS+LE + G+G  RR+ LLK  GGLQ L +AS DEI+  PGIS +LAE IY 
Sbjct: 542 NRRQKVKTTSSLESIPGIGAKRRQTLLKFMGGLQGLKKASKDEISNVPGISPELAETIYD 601

Query: 603 NLH 605
           +LH
Sbjct: 602 HLH 604