Pairwise Alignments

Query, 1204 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1093 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  426 bits (1096), Expect = e-123
 Identities = 239/579 (41%), Positives = 354/579 (61%), Gaps = 5/579 (0%)

Query: 10  TAILLIGLFSPAAM-ALDEPHTLQLLGHATLENPGLELDESDWRWLRQRRTLVMGVSAPD 68
           + +L IGL +   + A  EP    LL  +      L L   D  WL+QR  LVMG + PD
Sbjct: 7   SVLLAIGLANSTELQASSEPR--HLLARSISAAAPLTLSGDDRHWLKQRERLVMGSARPD 64

Query: 69  YAPFDLS-NNKDFEGITADYAWLISLILSVPIEVRRYDTRDEVIEALKLGQVDLVGSANG 127
           Y PF+++ +  D+EG++ADYA +I   L +PIEVRR+D+R E I AL+ G++DL+GS+N 
Sbjct: 65  YPPFEINVSQHDYEGLSADYAGIIGEQLDIPIEVRRFDSRHEAITALRDGRIDLLGSSNA 124

Query: 128 YEAADKGLVLSRSYANDQPVLITRAGDSHLLSADLAGKRVAMLYHYMQPDAVQAYYPKAQ 187
           +EAAD  L LS  YA+D PV++TR G S   + +LAG R+AM+ HY+   +V+  YPKAQ
Sbjct: 125 FEAADAQLSLSTPYADDLPVIVTREGRSLKSTPELAGLRLAMVDHYLPAVSVRTLYPKAQ 184

Query: 188 LLLYGSTHQAIGSVAFGQADVYLGDIISARYLIKKNHLNNIRMADFSGLEVNPFGFAFTA 247
           L LY ST   + +VA G+AD YLGD IS  Y+I K+    +++  FS L    F FA  +
Sbjct: 185 LSLYRSTLAGLAAVALGEADAYLGDAISTDYMIGKSFQGTLKIDHFSQLAPEAFAFAIAS 244

Query: 248 DNIRLLNIINAALAVIPASQQMSILRRWSAADSGVLEADRLR-LSDSEQRWLEKHPRVKV 306
           DN RL  +++ AL+ I  S++++ILRRWS+ ++ +L    L  LS+ E+ W+  HP + V
Sbjct: 245 DNPRLHRLVDKALSRISESERLNILRRWSSGNTSLLLQRHLTALSEEEESWITAHPTISV 304

Query: 307 AVLDKFMPLSFLDERGQFVGLSDEVLSRISLRTGLKFEMVHGNSLTRQIDEVSSGQADML 366
            V     PL+F D + +  G++ ++L +ISLRTGL+F  V   S    ID +  G+A M+
Sbjct: 305 LVNTSLAPLTFNDAQHRPSGITLDLLKQISLRTGLQFTPVESASSQAMIDRLVRGEAQMI 364

Query: 367 AVITPSVERAEKVRFTRPYLSNPYVLVARASDERLLTLEDMPGKRLAFIGGNSLGAQIAR 426
             +    +R +++R+TRPYL +P VLV R   E     + + GKR+A + G+   A + +
Sbjct: 365 GALGYGADRLKQLRYTRPYLVSPRVLVTRNDGESPAQAKALDGKRIALVRGSPQQAVLQQ 424

Query: 427 DYPGIQFVDVGNPEAAMDLVAKGSVDATIVSLISARYMIARNYRDRLRITSTIGTEPARI 486
            YP  + V+V NP   M+ VA G  DA + S I+A Y I+  ++DRLRI + +   PA  
Sbjct: 425 RYPQAEIVEVDNPLGQMEAVANGVADAALSSHINAAYYISHVFKDRLRIANMLDDAPAIA 484

Query: 487 AFGVNRSQLELYSILEKALLSITPEEMDELSNRWRSEIIIDDSYWSSHRNVIIQGFGLAA 546
           AF V   Q +L +IL+KALLSI PEE+D+L NRWR+  ++ DS W  +R + +Q   L+A
Sbjct: 485 AFAVAADQPQLQAILDKALLSIPPEELDQLINRWRTSTLVSDSPWRDYRTLALQVLVLSA 544

Query: 547 LLLLVTLGWVLYLRNLIHKRAQAEQALSDQMRFMSVLID 585
           LLL   + W  YLR LI++R +A+ AL  Q+     L++
Sbjct: 545 LLLAGVVFWNSYLRKLINQRTEAQHALQAQLALSRGLLE 583



 Score =  396 bits (1017), Expect = e-114
 Identities = 242/479 (50%), Positives = 301/479 (62%), Gaps = 14/479 (2%)

Query: 697  LLGQLQEAKEEADAANRAKTTFLATMSHEIRTPMNAVIGMIELAQKNAEQGRVDQDALEV 756
            LL QL++AK++A+ A++ K+TFLATMSHEIRTPMNAVIG++ELA +++  GR D   L+ 
Sbjct: 581  LLEQLRQAKDDAEQASQTKSTFLATMSHEIRTPMNAVIGLLELALEDSRSGRSDAQTLQT 640

Query: 757  ASMASRSMLELIGDILDIARIETGHLSLSLEQANLHELLASVARVFEGLARDKGLLLQVE 816
            A  ++  +LELIGDILDI+RIE+GH+SL     NL EL+ +  RVFEG AR KGL L  E
Sbjct: 641  AHDSAIGLLELIGDILDISRIESGHISLQPVPTNLVELVRATLRVFEGNARAKGLHLHGE 700

Query: 817  LDPMIDRAVLIDPLRFKQVVSNLLGNAIKFTATGQVRLGAQSTPTLAGDH-LSLRLCVED 875
            L P     VL DPLR KQ++SNL+ NAIKFT  G+V+      P +AG   L++ L V D
Sbjct: 701  L-PAEPVWVLADPLRLKQILSNLISNAIKFTDRGEVQ-ACLLLPKVAGHGILAIELNVRD 758

Query: 876  TGIGISAEDQQRLFSPFIQGSNNDQSARSGSGLGLVISRNLCEMMGGQLHLSSVLGKGTR 935
            TGIGIS  DQ RLFS F+Q       AR G+GLGLVISR L E+MGG L L SV G GTR
Sbjct: 759  TGIGISPADQARLFSAFVQVDG--PRARQGAGLGLVISRTLAELMGGALSLQSVEGVGTR 816

Query: 936  VDLTLTLATATATPVYAPAPPAPATHA-----LNLLVVDDYPANRLLLARQLSFLGHRIV 990
            V ++L L    A    A A P   TH      LN+LVVDDYPAN LLL RQL  LGH + 
Sbjct: 817  VQVSLRLPVCEAP---AQADPQLTTHESNSGPLNILVVDDYPANLLLLERQLQTLGHHVT 873

Query: 991  TAEDGAEGFALWQDGQFDGVITDSNMPIMDGYTLARDIRAQERQRGLVPCLLLGFTANAQ 1050
             AE+G    A WQ+ +FD VITD +MP+MDG+ L R IR+ E +RGL    +LG TANAQ
Sbjct: 874  LAENGEIALARWQEARFDLVITDCSMPVMDGHELTRRIRSLEGERGLPAGRILGVTANAQ 933

Query: 1051 PEETERCRQAGMDGCLFKPTGLDDLRTALAS-RTAAPEEKEVVPVCDLSTLVALTGGDTA 1109
             EE  RC  +GMD CLFKP GL  L+T L   R   P  +      DL+ L  LT  D  
Sbjct: 934  AEERTRCLASGMDECLFKPIGLRTLKTHLPQVRPQQPSPEPFHSGFDLAELRHLTQDDEQ 993

Query: 1110 GLNELLAPLLDSLAEDRLVLSTLRARTDFGKLHDLAHRVKGGARMVKSQALVACCETLE 1168
                LL  L  S+ ED   L  L        +  LAHR+KGGA+M++ + +V  CE +E
Sbjct: 994  LTRHLLEQLSISVGEDLAALRALSTDAPDETVRALAHRIKGGAKMIRVRTVVKDCEAIE 1052