Pairwise Alignments

Query, 1204 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  218 bits (555), Expect = 3e-60
 Identities = 166/507 (32%), Positives = 247/507 (48%), Gaps = 24/507 (4%)

Query: 596  RQGRLMACNNAYLDVFGFKLEDVIGKTVVQTDTGNPPQAQSFHADYLSLM---ERGEPQI 652
            + G +   N A   + G+ L++++GK +        P    F  +  S+    + G+P+ 
Sbjct: 491  QDGTMSFVNPAGARMLGYGLDEIVGKPLHALAHHTYPDGTPFPRECCSMFLTSQDGQPRT 550

Query: 653  Q-DRVLKVPGGGVLTIYQWMLPYRDSNGAVVGMIAGWVDVSERQRLLGQLQEAKEEADAA 711
            + D VL    G    +     P    +G VVG +  + D++ER+R    L +A + A+AA
Sbjct: 551  EVDEVLWRKDGTSFPVEYSTTPVL-KDGTVVGTVVTFRDITERKRADALLHQALDRAEAA 609

Query: 712  NRAKTTFLATMSHEIRTPMNAVIGMIELAQKNAEQGRVDQDALEVASMASRSMLELIGDI 771
            ++AK  FLA MSHEIRTPMNA+IGM  LA K     R  +D +     + + +L +I DI
Sbjct: 610  SQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPR-QRDYVRKIQQSGQHLLGIINDI 668

Query: 772  LDIARIETGHLSLSLEQANLHELLASVARVFEGLARDKGLLLQVELDPMIDRAVLIDPLR 831
            LD ++IE G LS+     +L  +L +VA +       KGL L  ++   +   ++ DPLR
Sbjct: 669  LDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVPNDMVGDPLR 728

Query: 832  FKQVVSNLLGNAIKFTATGQVRLGAQSTPTLAGDHLSLRLCVEDTGIGISAEDQQRLFSP 891
              Q++ N   NA+KFT TG++ +  +    L G+ + LR  V DTGIG+SAE   RLF  
Sbjct: 729  LGQILINYANNAVKFTETGEIVVAVRLAEDL-GEAVRLRFEVRDTGIGLSAEQMGRLFQS 787

Query: 892  FIQGSNNDQSARSGSGLGLVISRNLCEMMGGQLHLSSVLGKGTRVDLTLTLATATATPVY 951
            F Q   +      G+GLGL ISR L E+M G++ + S  G+G+    T  L         
Sbjct: 788  FQQADTSTTRKYGGTGLGLAISRKLAELMDGEVGVESQPGRGSTFWFTACLGKGRPRRAL 847

Query: 952  APAPPAPATHALNLLVVDDYPANRLLLARQLSFLGHRIVTAEDGAEGFALWQD----GQF 1007
             P P     H   +LVVDD    R +L   L+ +  R+   E GA   A  ++      F
Sbjct: 848  VPKPDLRGRH---MLVVDDNENARAVLVDMLTSMSFRVEAVESGAAAVARVREVAGAKPF 904

Query: 1008 DGVITDSNMPIMDGYTLARDIRAQERQRGLV-PCLLLGFTANAQPEETERCRQAGMDGCL 1066
            + V  D  MP MDG   AR I       GL  P  ++  TA+ + E  +    AG++  L
Sbjct: 905  EVVFLDWQMPGMDGIETARAILG----LGLTSPPHMIMVTAHGREEVMKAAESAGIEDVL 960

Query: 1067 FKPTG----LDDLRTAL-ASRTAAPEE 1088
             KP       D +  AL A+    PEE
Sbjct: 961  IKPVNPSIMFDAVMRALGAALEGDPEE 987



 Score = 73.6 bits (179), Expect = 1e-16
 Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 23/252 (9%)

Query: 963  LNLLVVDDYPANRLLLARQLSFLGHRIVTAEDGAEGFALWQDGQFDGVITDSNMPIMDGY 1022
            L +L+ +D   N+ +    L+  G  +  AE+G     +     +D V+ D  MP+MDG 
Sbjct: 1005 LRVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAVDMVMAAPYDMVLMDMQMPVMDGV 1064

Query: 1023 TLARDIRAQERQRGLVPCLLLGFTANAQPEETERCRQAGMDGCLFKPTGLDDLRTAL--- 1079
               R+I    R+ G     ++  TANA   + +RC  AGM+  L KP   D+L   L   
Sbjct: 1065 AATREI----RRLGFGDLPVIAMTANAMQADRDRCAAAGMNDYLTKPIDPDELFACLLKW 1120

Query: 1080 ------------ASRTAAPEEKEVVP-VCDLSTLVALTGGDTAGLNELLAPLLDSLAEDR 1126
                        A   A P   E+ P V D   +  +   D A L  +LA  LD      
Sbjct: 1121 RGVAPTAVVAPAAPAGAVPLLPEIDPDVFDFERMGPIYKWDMARLRPILAAFLDDAGTK- 1179

Query: 1127 LVLSTLRARTDFGKLHDLAHRVKGGARMVKSQALVACCETLEDVCERRDRDALAATVDAI 1186
              ++ L A TD   L ++AH +KG A    +  L      +E+     +  A    +  +
Sbjct: 1180 --VARLEAETDLAALREVAHGLKGTANTAGALRLGRLAADVENSARDGNDAAAGMLIPLL 1237

Query: 1187 GHAMDRLHHSLS 1198
               +  L  +L+
Sbjct: 1238 PPTLSELRDALA 1249