Pairwise Alignments

Query, 1204 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1329 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  218 bits (555), Expect = 3e-60
 Identities = 157/524 (29%), Positives = 268/524 (51%), Gaps = 19/524 (3%)

Query: 563  IHKRAQAEQALSDQMRFMSVLIDGTPHPIYVRDRQGRLMACNNAYLDVFGFKLEDVIGKT 622
            I KR +AE+AL+ +   ++  +   P  + + D++ R +A +N +L+ +  + +D+ GK+
Sbjct: 542  ITKRKKAEKALTIEKARLNAFVTHAPAAVAMFDKEIRYIAYSNRWLEEYQLEGKDLYGKS 601

Query: 623  VVQTDTGNPPQAQSFHADYLSLMERGEPQIQDRVLKVPGGGVLTIY-QWML-PYRDSNGA 680
              +       + ++ HA  L    +GE    +     P G     + +W + P+   +G+
Sbjct: 602  HYEVFGTISEEWKAIHARCL----KGEVISNEEDRWRPDGWDHDQFLRWEVRPWHHYDGS 657

Query: 681  VVGMIAGWVDVSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRTPMNAVIGMIELA 740
            + G++    D++E      +L++AK  A+ A++AK+ FLA MSHEIRTP+N VIG  +L 
Sbjct: 658  IGGIMMLTQDITESCLQREELKKAKILAEQASKAKSEFLANMSHEIRTPLNGVIGFTDLV 717

Query: 741  QKNAEQGRVDQDALEVASMASRSMLELIGDILDIARIETGHLSLSLEQANLHELLASVAR 800
             K  +        L + + +  ++L +I DILD ++IE G L L +++ +L+EL    + 
Sbjct: 718  LKT-DLSETQAQYLSIVNQSGNALLNIINDILDFSKIEAGKLELDIDRCDLYELTEQTSD 776

Query: 801  VFEGLARDKGLLLQVELDPMIDRAVLIDPLRFKQVVSNLLGNAIKFTATGQVRLGAQS-T 859
            +       KGL + + + P I R + +D +R KQ++ NLLGNA KFT  G++ L      
Sbjct: 777  IITYEVHKKGLEMLLNIHPDIPRFIWVDSVRVKQIMVNLLGNASKFTEEGEIELQLYPID 836

Query: 860  PTLAGDHLSLRLCVEDTGIGISAEDQQRLFSPFIQGSNNDQSARSGSGLGLVISRNLCEM 919
               A   + +R  V DTGIGI AE Q ++F  F Q   +      G+GLGL IS  L ++
Sbjct: 837  KDEASREMVIRFSVRDTGIGIKAEKQTKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQL 896

Query: 920  MGGQLHLSSVLGKGTRVDLTLTLATATATPVYAPAPPAPATHALNLLVVDDYPANRLLLA 979
            M   L L S +GKG+     L +       +             N+L+VDD   NR+++ 
Sbjct: 897  MHSGLQLHSTVGKGSTFYFDLNVKYEYGERITLEED----LSVENVLIVDDNDNNRMIIE 952

Query: 980  RQLSFLGHRIVTAEDGAEGFALWQDGQ-FDGVITDSNMPIMDGYTLARDIR-AQERQRGL 1037
            R ++  G     A++G E    + +G+ FD V+ D +MP M+G    R IR   +RQ   
Sbjct: 953  RMMALRGISTSQAKNGFEAIQKFVEGEKFDVVLMDYHMPYMNGIETIRKIREIVDRQ--- 1009

Query: 1038 VPCLLLGFTANAQPEETERCRQAGMDGCLFKPTGLDDLRTALAS 1081
             P + L  +++   +  + C++ G+   L KP  L ++  AL S
Sbjct: 1010 -PIIFL-HSSSDDDKILKACKELGVRKKLVKPIKLQEMYDALLS 1051



 Score = 46.6 bits (109), Expect = 1e-08
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 965  LLVVDDYPANRLLLARQLSFLGHR--IVTAEDGAEGFALWQDGQFDGVITDSNMPIMDGY 1022
            +L+V+D   N LL    +  L     I+ A +G E   + +D     +  D  MP M+GY
Sbjct: 1079 VLIVEDNTINMLLAKTVIHNLSPATAILEAANGKEALEVMKDELPSVIFMDVQMPEMNGY 1138

Query: 1023 TLARDIRAQERQRGLVPCLLLGFTANAQPEETERCRQAGMDGCLFKPTGLDDL 1075
               + IR +  +  +   L++  TA     E E+C QAGM+  + KP   +D+
Sbjct: 1139 EATQAIRKKYNKHNI---LIIALTAGNIKGEREKCMQAGMNDFIAKPFVEEDV 1188



 Score = 27.3 bits (59), Expect = 0.009
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 595 DRQGRLMACNNAYLDVFGFKLEDVIGKTVVQTDTGNPPQAQSFHADYLS-LMERGEPQIQ 653
           D +G  +  N A  +  GF   +++GK++       P Q       YL  + + G  Q  
Sbjct: 181 DLEGNFLMANKASANSLGFHKGELVGKSLSDV---IPLQYHGSLKQYLKYIRQNGNSQGT 237

Query: 654 DRVLKVPGGGVLTIYQWMLPYRDSNGAVVGMIAGWVDVSERQRLLGQLQEAKEEADAAN 712
             V    G   + +Y  +L   D  G    ++   +D++ER RL  +    KE  +  N
Sbjct: 238 MHVQHKDGSIRIWLYSNIL-LNDQAGTPY-VLGNALDITERHRLEREYNRLKEMLEQTN 294