Pairwise Alignments

Query, 496 a.a., LuxR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 730 a.a., PAS:GGDEF from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 65.9 bits (159), Expect = 5e-15
 Identities = 33/157 (21%), Positives = 81/157 (51%), Gaps = 6/157 (3%)

Query: 113 RSLVITDSRGEPELLVLILSDATEWAS------AEQRFEKTFNANPAPAVICRLSDLRYI 166
           R+ +  D +G+P  L   L D T+  +      +E++F K F+++P    I  +   RY+
Sbjct: 128 RARIYRDEQGQPVRLSGTLMDITQQCAQVALEASEEKFAKAFHSSPDSITITEIDSGRYV 187

Query: 167 KVNQGFLEMTGYNRDQVIGKSVYELDVLEQAERKDLAIQRLGEGATIPQMQAELRLPEGG 226
           +VN GF  +TG++  +V+G++ +E+ +     +++  ++ L +   +   + + R   G 
Sbjct: 188 EVNDGFSRLTGFSAHEVLGRTAHEVGIWTDTLQREHMLEELRQKGRVHHREMDGRDKHGA 247

Query: 227 SKLVIVAGQPLDMNEEDCMLFSFMDLEPRRKAEIALR 263
             ++ ++ + + +N   C+L +  D+   + A+  ++
Sbjct: 248 PLVLDISVEFITLNNTACLLMNARDIGALKNAQAQIQ 284



 Score = 60.5 bits (145), Expect = 2e-13
 Identities = 43/215 (20%), Positives = 98/215 (45%), Gaps = 15/215 (6%)

Query: 181 DQVIGKSVYELDVLEQAERKDLAIQRLGEGATIPQMQAELRLPEGGSKLVI--------V 232
           D+  G+    L   E+   + +    L  G    Q+    +L  G S+L+          
Sbjct: 76  DESGGQFFGSLPAEERRRMRAIYAAALETGQDCLQVTYRFQLKNGTSRLLEGRARIYRDE 135

Query: 233 AGQPLDMNEEDCMLFSFMDLEPRRKAEIALRQSEERFAKSFRLTPVPTLVCSASNRQVVD 292
            GQP+ ++       + MD+  ++ A++AL  SEE+FAK+F  +P    +    + + V+
Sbjct: 136 QGQPVRLSG------TLMDIT-QQCAQVALEASEEKFAKAFHSSPDSITITEIDSGRYVE 188

Query: 293 INEAFMSITGYTSEELIGKSIEDISFIDSPQAGAQLFTTLEKAGNLDGQDLKVRKKGNEV 352
           +N+ F  +TG+++ E++G++  ++           +   L + G +  +++  R K    
Sbjct: 189 VNDGFSRLTGFSAHEVLGRTAHEVGIWTDTLQREHMLEELRQKGRVHHREMDGRDKHGAP 248

Query: 353 IDCVVSADTVIIEDVPCYLLVMMNITERKRSELEL 387
           +   +S + + + +  C L+   +I   K ++ ++
Sbjct: 249 LVLDISVEFITLNNTACLLMNARDIGALKNAQAQI 283