Pairwise Alignments

Query, 496 a.a., LuxR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  119 bits (297), Expect = 7e-31
 Identities = 61/282 (21%), Positives = 144/282 (51%), Gaps = 7/282 (2%)

Query: 113 RSLVITDSRGEPELLVLILSDATEWASAEQR-------FEKTFNANPAPAVICRLSDLRY 165
           R+ +  D +G P  +   L D T+    EQR       F   F  +P P  + R    ++
Sbjct: 376 RARLYRDDQGIPLRMAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQF 435

Query: 166 IKVNQGFLEMTGYNRDQVIGKSVYELDVLEQAERKDLAIQRLGEGATIPQMQAELRLPEG 225
           I++N  F +  G++  QV+G++  E+ +  ++  +   I+++     +  +   L    G
Sbjct: 436 IEINPAFTQTFGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNG 495

Query: 226 GSKLVIVAGQPLDMNEEDCMLFSFMDLEPRRKAEIALRQSEERFAKSFRLTPVPTLVCSA 285
                +++ + + ++++ C + +  D+  +++AE AL+ SEE+FAK+F  +P    +   
Sbjct: 496 DPLTCVISSRLITVDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITER 555

Query: 286 SNRQVVDINEAFMSITGYTSEELIGKSIEDISFIDSPQAGAQLFTTLEKAGNLDGQDLKV 345
            + + +++N+ F  +TGY+++E+IG ++ +I      +  + L   L + G +  +++  
Sbjct: 556 HSGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSALLAELRERGRVHHREMLG 615

Query: 346 RKKGNEVIDCVVSADTVIIEDVPCYLLVMMNITERKRSELEL 387
           R K  +++   VS + + + +V C LL   ++++ K ++ ++
Sbjct: 616 RNKRGDILTVEVSVEPITLNEVDCLLLTARDVSQLKNAQAQI 657



 Score = 80.1 bits (196), Expect = 4e-19
 Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 28/237 (11%)

Query: 33  QTILWANEAALAMHGVGDVMGLGADGQQYAKRFALRYRNNHPIQPENYPLARAAA----- 87
           QT  W++   L      + +GL A+  + AKR     R           L+  A      
Sbjct: 444 QTFGWSSAQVLGR--TAEEIGLWAESVERAKRIEQVIREQ--------ALSNVAVVLNHR 493

Query: 88  -GDEFSDVVVEVTPTADEEKTWVHRLRSLVITDSRGEPELLVLILSDATEWASAEQRFEK 146
            GD  + V+     T D++   V  LR +     R E  L            S+E++F K
Sbjct: 494 NGDPLTCVISSRLITVDDQPCSVTTLRDIT-QQQRAEAAL-----------KSSEEKFAK 541

Query: 147 TFNANPAPAVICRLSDLRYIKVNQGFLEMTGYNRDQVIGKSVYELDVLEQAERKDLAIQR 206
            F+++P    I      RY++VN GF  +TGY+ D+VIG +VYE+ +    +++   +  
Sbjct: 542 AFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSALLAE 601

Query: 207 LGEGATIPQMQAELRLPEGGSKLVIVAGQPLDMNEEDCMLFSFMDLEPRRKAEIALR 263
           L E   +   +   R   G    V V+ +P+ +NE DC+L +  D+   + A+  +R
Sbjct: 602 LRERGRVHHREMLGRNKRGDILTVEVSVEPITLNEVDCLLLTARDVSQLKNAQAQIR 658



 Score = 71.2 bits (173), Expect = 2e-16
 Identities = 37/149 (24%), Positives = 79/149 (53%)

Query: 245 MLFSFMDLEPRRKAEIALRQSEERFAKSFRLTPVPTLVCSASNRQVVDINEAFMSITGYT 304
           M  + +D+  + + E  L  SEE+FA  F+++P P  V      Q ++IN AF    G++
Sbjct: 390 MAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWS 449

Query: 305 SEELIGKSIEDISFIDSPQAGAQLFTTLEKAGNLDGQDLKVRKKGNEVIDCVVSADTVII 364
           S +++G++ E+I         A+    + +   L    + +  +  + + CV+S+  + +
Sbjct: 450 SAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDPLTCVISSRLITV 509

Query: 365 EDVPCYLLVMMNITERKRSELELVAAIEE 393
           +D PC +  + +IT+++R+E  L ++ E+
Sbjct: 510 DDQPCSVTTLRDITQQQRAEAALKSSEEK 538



 Score = 66.2 bits (160), Expect = 6e-15
 Identities = 50/223 (22%), Positives = 105/223 (47%), Gaps = 4/223 (1%)

Query: 169 NQGFLEMTGYNRDQVIGKSVYELDVLEQAERKDL--AIQRLGEGATIPQ-MQAELRLPEG 225
           ++G   + G++  + +   +  LD+L + +R       Q +  G  + Q M+  +R P+G
Sbjct: 56  SRGTQALFGFDPQRPLPADIDYLDLLPEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDG 115

Query: 226 GSKLVIVAGQPL-DMNEEDCMLFSFMDLEPRRKAEIALRQSEERFAKSFRLTPVPTLVCS 284
               + + G    D +    M+    ++  +R+ E AL  SE+RFA  F L+P   L+  
Sbjct: 116 SLHWLEINGSLTHDPHGRPQMIGVIREITRQRERETALINSEKRFATLFHLSPNAILLTR 175

Query: 285 ASNRQVVDINEAFMSITGYTSEELIGKSIEDISFIDSPQAGAQLFTTLEKAGNLDGQDLK 344
             +  + ++N+ F  + G+   ++IGK+  ++    +P+   Q+  +    G     +++
Sbjct: 176 RRDGMIFEVNQHFEDMFGWPGSQVIGKTSLELGLWVNPEQRHQIVESTRANGGPLIMEVQ 235

Query: 345 VRKKGNEVIDCVVSADTVIIEDVPCYLLVMMNITERKRSELEL 387
            R    +V D ++    + +E V   +   ++ TERKR+E  L
Sbjct: 236 FRATSGKVHDGILCTQGIELEGVTFLISTFVDTTERKRAEQAL 278



 Score = 60.5 bits (145), Expect = 3e-13
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 119 DSRGEPELLVLILSDA------TEWASAEQRFEKTFNANPAPAVICRLSDLRYIKVNQGF 172
           D  G P+++ +I          T   ++E+RF   F+ +P   ++ R  D    +VNQ F
Sbjct: 129 DPHGRPQMIGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHF 188

Query: 173 LEMTGYNRDQVIGKSVYELDVLEQAERKDLAIQRLGEGATIPQMQAELRLPEGGSKLVIV 232
            +M G+   QVIGK+  EL +    E++   ++          M+ + R   G     I+
Sbjct: 189 EDMFGWPGSQVIGKTSLELGLWVNPEQRHQIVESTRANGGPLIMEVQFRATSGKVHDGIL 248

Query: 233 AGQPLDMNEEDCMLFSFMDLEPRRKAEIALRQSEER 268
             Q +++     ++ +F+D   R++AE AL+ S+ER
Sbjct: 249 CTQGIELEGVTFLISTFVDTTERKRAEQALKDSQER 284