Pairwise Alignments

Query, 496 a.a., LuxR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  102 bits (255), Expect = 6e-26
 Identities = 75/298 (25%), Positives = 140/298 (46%), Gaps = 7/298 (2%)

Query: 102 ADEEKTWVHRLRSLVITDSRGEPELLVLILSDATEWASA----EQRFEKTFNANPAPAVI 157
           AD +  WV  + S++    +     L++ +S+      A    EQ+F   F   P   +I
Sbjct: 393 ADGQPLWVRNIVSMIEHGHQPVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLI 452

Query: 158 CRLSDLRYIKVNQGFLEMTGYNRDQVIGKSVYELDVLEQAERKDLAIQRLGEGATIPQMQ 217
            R SD   ++VN+ F E  G   DQVIG++  +LD+        L ++RL +G  I  ++
Sbjct: 453 ARHSDGCLLEVNEAFEEQIGLPPDQVIGRTATDLDLWGVEGSGPLLLERLHQGG-IRNLE 511

Query: 218 AELRLPEGGSKLVIVAGQPLDMNEEDCMLFSFMDLEPRRKAEIALRQSEERFAKSFRLTP 277
              R   G     + + +  +++    ++ +  D+   ++ +  L+ SEE+FAK+F  +P
Sbjct: 512 MSFRRSNGQLFTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASP 571

Query: 278 VPTLVCSASNRQVVDINEAFMSITGYTSEELIGKSIEDISFIDSPQAGAQLFTTLEKAGN 337
              L+   S+  ++++NE F  +TGY     I ++  D+          +L   L + G 
Sbjct: 572 DGLLLSRQSDGLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNRDGF 631

Query: 338 LDGQDLKVRKKGNEVIDCVVSADTVIIEDVPCYLLVMMNITER--KRSELELVAAIEE 393
           +      +R+   ++  C +SA  + I  V C L +  +ITER   + +L+L A + E
Sbjct: 632 VRDFTCHIRRSDGQIRLCELSARPLPITGVDCMLTIARDITERHLMQEKLQLAATVFE 689



 Score = 30.0 bits (66), Expect = 5e-04
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 125 ELLVLILSDATEWASAEQRFE--KTFNANPAPAVICRLSDLRYIKVNQGFLEMTGYNRDQ 182
           + ++ I  D TE    +++ +   T   N A  V+    D R   VN+ F E+TGY+  +
Sbjct: 662 DCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEIE 721

Query: 183 VIGKS 187
            +G++
Sbjct: 722 ALGQT 726



 Score = 26.6 bits (57), Expect = 0.006
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 6   LAKETNRRQLQQ--------IISGLSDGVILAEMDQTILWANEAALAMHGVGDVMGLG 55
           +A++   R L Q        +    ++GV++ ++DQ I   N A   + G  ++  LG
Sbjct: 667 IARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEIEALG 724