Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 907 a.a., DNA topoisomerase 1 from Xanthobacter sp. DMC5

 Score =  141 bits (355), Expect = 1e-37
 Identities = 166/627 (26%), Positives = 269/627 (42%), Gaps = 85/627 (13%)

Query: 1   MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDEKYKRWV 60
           M++ + E P++AK I             +LG G  V    GH+ +    D   +      
Sbjct: 13  MQVVIVESPAKAKTINK-----------YLGPGYEVIASYGHVRDLPSKDGSVD------ 55

Query: 61  LADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRYR 120
               P    +    V PK   +   +   +  A  L++ATD DREGE I+  ++E  R +
Sbjct: 56  ----PDADFRMLWDVDPKAQKRLNEIAAAVKGADGLILATDPDREGEAISWHVLEVLRQK 111

Query: 121 GP-----IQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFT 175
                  ++R+  +A+   ++ +A+ +  P A   +L  + L R   D+L+G  +S    
Sbjct: 112 KALKSQKVERVVFNAITKQAVLEAMKS--PRAIDSALVDAYLARRALDYLVGFTLS---P 166

Query: 176 LLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERIT-FTAQWR 234
           +L R+    G    GRVQ+  LRLV DR+R I  FV   YW+I   L   R   F A+  
Sbjct: 167 VLWRK--LPGARSAGRVQSVALRLVCDREREIETFVRKEYWSILAKLATPRNEEFEARLS 224

Query: 235 AAEDACDDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGTLQEICSK 294
            A+     +      + AR   +A+ +AA  R+  +  + M+     PF   TLQ+  S+
Sbjct: 225 GADGKKITRLSVGTAEEARAFREALDSAAF-RVRSVEAKPMKRHPQPPFTTSTLQQEASR 283

Query: 295 KLGLGAQETLDIAQSLY-------ETHKVITYPRSDCGYLPLSQHSEAPKILAALARADA 347
           KLGL    T+ IAQ LY       ET  +ITY R+D           AP+ +AA   A  
Sbjct: 284 KLGLAPARTMQIAQRLYEGVDVGGETVGLITYMRTD-------GVDMAPEAVAATRDAIG 336

Query: 348 AV--NELMPHIETQRRSRAWNDAKVSAHHGIIPTGAG---KDVGQ-LTGKHRAVYTLIRA 401
                + +P +  +  ++A N  +  AH  I PT      +DV + L G+   +Y LI  
Sbjct: 337 KQFGQKYLPGVPRKYTTKAKNAQE--AHEAIRPTDPSRHPRDVARYLDGEQAKLYELIWI 394

Query: 402 RYLAQFLPNHEYDRTQADFDCAGQA----LRAVGKVVIEPGWKRALPEALAPAKGREAPA 457
           R +A  + + E +RT AD +    A    L A G VV   G+     E        E   
Sbjct: 395 RTVASQMESAELERTTADIEAKAGARTLDLTATGTVVKFDGFLTLYREGKDDEDDDE--E 452

Query: 458 PQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTT 517
            + LPA+   +  A   ++    +T+PP  ++E  L+K M+ +                 
Sbjct: 453 GRRLPAMSANEALAKRDISTTQHFTEPPPRYSEASLVKRMEEL----------------- 495

Query: 518 GIGTEATRAGIIQGLLDRGYLVKNGKAL---SATPAAFSLIDAVPRAIADPGTTAIWEQA 574
           GIG  +T A ++  L DR Y+  + K L          + +++  +   +   TA  E+ 
Sbjct: 496 GIGRPSTYAAVLAVLRDREYVKLDKKKLVPEDKGRLVTAFLESFFKRYVEYDFTADLEEK 555

Query: 575 LDMVQSGEMSLEEFVAKQAAWMSKQVA 601
           LD V + E+  +E +  +A W     A
Sbjct: 556 LDEVSAAELDWKEVL--RAFWQDFHAA 580