Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 873 a.a., DNA topoisomerase I from Pseudomonas simiae WCS417

 Score =  140 bits (354), Expect = 2e-37
 Identities = 158/631 (25%), Positives = 261/631 (41%), Gaps = 106/631 (16%)

Query: 3   LYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLET---------------- 46
           L + E P++AK I             +LGN   V   IGH+ +                 
Sbjct: 5   LVIVESPAKAKTINK-----------YLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKR 53

Query: 47  -------APPDAYDEKYKRWVLADLPIVPE---KWKMRVKPKTASQFKAVKRLLGEAQEL 96
                   P     EK ++ +++ + + P+   K K  + P      + ++RL  +A  +
Sbjct: 54  GKAAAGEGPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTI 113

Query: 97  VIATDADREGEMIARELVE-----HCRYRGPIQRLWLSALDDASIRKALAALKPGAETFS 151
            +ATD DREGE IA  L E       RY+    R+  + +   +I++A +  KPG     
Sbjct: 114 YLATDLDREGEAIAWHLREAIGGDDSRYK----RVVFNEITKKAIQEAFS--KPGELDID 167

Query: 152 LYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFV 211
             ++   R   D ++G  +S L      +      L  GRVQ+  ++LVV+R+R I  F+
Sbjct: 168 RVNAQQARRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVKLVVEREREIRAFI 222

Query: 212 PVAYWAIDVDLQHERITFTAQWRAAE-DACDDQGRCLDPQLARDAADAMR--NAATARLV 268
           P  YW +  DL       TA+      +   ++G    P     A  A+    +++  +V
Sbjct: 223 PEEYWEVHADLG------TAKGANVRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIV 276

Query: 269 KLRTERMREVAPLPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLP 328
           K   +        PF   TLQ+  S +LG G ++T+ +AQ LYE    ITY R+D   L 
Sbjct: 277 KREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTDSTNLS 335

Query: 329 LSQHSEAPKILAALARADAAVNELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQL 388
           +           A+AR          ++  +    +  +    AH  I P+ A     +L
Sbjct: 336 VD--------AVAMARTYIEEEFGKKYLPEKPNVYSSKEGAQEAHEAIRPSDANTTPAKL 387

Query: 389 TGKHR---AVYTLIRARYLA-QFLPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALP 444
           +G  R    +Y LI  ++LA Q LP  +Y  T      +   LRA G+++   G+ R +P
Sbjct: 388 SGMERDAERLYELIWRQFLACQMLP-AQYLSTTVTVAASDFELRAKGRILKFDGYTRVMP 446

Query: 445 EALAPAKGREAPAPQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLV 504
           +   P           LP + QG    +  ++    +T+PP  ++E  L+K M       
Sbjct: 447 QIAKPGD------DDVLPDMAQGDTLKLITLDPSQHFTKPPARYSEASLVKEM------- 493

Query: 505 EDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRA--- 561
                     +  GIG  +T A II  + DRGY+  + +   +      + + +  +   
Sbjct: 494 ----------EKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSESFSN 543

Query: 562 IADPGTTAIWEQALDMVQSGEMS----LEEF 588
           + D G TA  E+ LD V  GE      L+EF
Sbjct: 544 LMDYGFTAGMEENLDDVAQGERDWKNVLDEF 574