Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 860 a.a., DNA topoisomerase I (EC 5.99.1.2) from Sphingobium sp. HT1-2

 Score =  167 bits (422), Expect = 2e-45
 Identities = 166/548 (30%), Positives = 251/548 (45%), Gaps = 72/548 (13%)

Query: 1   MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDEKYKRWV 60
           M+L + E P++AK I             +LG    V    GH+ +  P D   +    + 
Sbjct: 1   MQLVIVESPAKAKTIEK-----------YLGGDFHVLASYGHIRDLPPKDGSVDPDNGFA 49

Query: 61  LADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRYR 120
           ++        W+         Q KA+     +A  L++ATD DREGE I+  + E  R +
Sbjct: 50  MS--------WENY--GDKGKQLKAIADEAKKATRLILATDPDREGEAISWHVQEVLRAK 99

Query: 121 GP----IQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTL 176
                 + R+  +A+  A++  A+A  KP A    L  +   R   D+L+G  +S    +
Sbjct: 100 KALPQTVDRVTFNAITKAAVLDAMA--KPRALDEDLIDAYRARRALDYLVGFTLS---PV 154

Query: 177 LGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERITFTA---QW 233
           L R+    G    GRVQ+  LRLVV+R+R I  FVP  YW+I  +++     FTA   +W
Sbjct: 155 LWRK--LPGAKSAGRVQSVALRLVVEREREIESFVPQEYWSISAEMEQGGQGFTARLVRW 212

Query: 234 RAAEDACDDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGTLQEICS 293
           +  +      G+  D   A+   +A R        K+ T+ +    P PF   TLQ+  +
Sbjct: 213 KGEKIDRLTIGKEGDAMAAKADVEAGRFTVD----KVETKPLTRNPPPPFTTSTLQQEAA 268

Query: 294 KKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAAVNELM 353
           +KLG  A  T+ IAQ LYE    ITY R+D   +  S  S A K +A   R D      +
Sbjct: 269 RKLGFSASHTMRIAQQLYE-DGAITYMRTDGVQMDGSAISAARKAIA--ERYDGG---YL 322

Query: 354 PHIETQRRSRAWNDAKVSAHHGIIPTGAGKD-VGQLTGKHRAVYTLIRARYLAQFLPNHE 412
           P    Q +++A N  +  AH  I PT   +D VG   G H  +Y LI  R LA  + +  
Sbjct: 323 PEKPRQYQTKAKNAQE--AHEAIRPTEFHRDKVG--GGDHARLYDLIFKRALASQMASAR 378

Query: 413 YDRTQADF-DCAG-QALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPALVQGQDY 470
            +RT  D  D +G   LRA G+VVI PG+     E    A+  ++   + LP L +G   
Sbjct: 379 LERTTIDMVDGSGSHTLRATGQVVIFPGFLALYEEGRDDAEDDDS---KLLPRLSEGDAP 435

Query: 471 AVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQ 530
           A  KV+ +  +TQPP  ++E  L+K ++ +                 GIG  +T A  +Q
Sbjct: 436 AKKKVSAEQHFTQPPPRYSEASLVKKLEEL-----------------GIGRPSTYASTLQ 478

Query: 531 GLLDRGYL 538
            L DR Y+
Sbjct: 479 VLKDRDYV 486