Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

 Score =  154 bits (389), Expect = 2e-41
 Identities = 172/667 (25%), Positives = 278/667 (41%), Gaps = 113/667 (16%)

Query: 3   LYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLET---------------- 46
           L + E P++AK I             +LGN   V   IGH+ +                 
Sbjct: 5   LVIVESPAKAKTINK-----------YLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKR 53

Query: 47  ------APPDAYDEKYKRWVLADLPIVPE---KWKMRVKPKTASQFKAVKRLLGEAQELV 97
                 AP  +  EK +R ++A + + P+   K K  + P      + ++RL  +A  + 
Sbjct: 54  GKAAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIY 113

Query: 98  IATDADREGEMIARELVE-----HCRYRGPIQRLWLSALDDASIRKALAALKPGAETFSL 152
           +ATD DREGE IA  L E       RY+    R+  + +   +I++A +  +PG      
Sbjct: 114 LATDLDREGEAIAWHLREAIGGDDTRYK----RVVFNEITKKAIQEAFS--QPGELDIDR 167

Query: 153 YHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVP 212
            ++   R   D ++G  +S L      +      L  GRVQ+  ++LVV+R+R I  F+P
Sbjct: 168 VNAQQARRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVKLVVEREREIRAFIP 222

Query: 213 VAYWAIDVDL---QHERITFTAQWRAAEDACDDQGRCLDPQLARDAADAMR--NAATARL 267
             YW I  DL   ++ ++ F        +   ++G    P     A  A+    A++  +
Sbjct: 223 EEYWEIHADLGTAKNAKVRF--------EVAREKGEAFKPLNEAQAMAALEKLKASSYSV 274

Query: 268 VKLRTERMREVAPLPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYL 327
           VK            PF   TLQ+  S +LG G ++T+ +AQ LYE    ITY R+D   L
Sbjct: 275 VKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTDSTNL 333

Query: 328 PLSQHSEAPKILAALARADAAVNELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQ 387
                ++A  +  +    +    + +P       S+   +    AH  I P+       +
Sbjct: 334 ----SADALDMARSYIEREFG-KQYLPEAPLVYGSK---EGAQEAHEAIRPSDVNTHPTK 385

Query: 388 LTGKHR---AVYTLIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALP 444
           L+G  R    +Y LI  ++LA  +P  +Y  T          LRA G+++   G+ R LP
Sbjct: 386 LSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVLP 445

Query: 445 EALAPAKGREAPAPQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLV 504
           +   P +         LP +VQG+   + +++    +T+PP  FTE  L+K M       
Sbjct: 446 QQSKPGE------DDVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEM------- 492

Query: 505 EDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRA--- 561
                     +  GIG  +T A II  + DRGY+  + +   +      + + +  +   
Sbjct: 493 ----------EKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSN 542

Query: 562 IADPGTTAIWEQALDMVQSGEMS----LEEFVAK-----QAAWMSKQVARCNGMRMTITG 612
           + D G TA  E+ LD V  GE      L+EF        Q A  S+   R N   MT   
Sbjct: 543 LMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMRANQPTMT-NI 601

Query: 613 PASPAGR 619
           P    GR
Sbjct: 602 PCKECGR 608