Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 867 a.a., type I DNA topoisomerase from Dickeya dianthicola ME23

 Score =  130 bits (326), Expect = 3e-34
 Identities = 168/638 (26%), Positives = 260/638 (40%), Gaps = 105/638 (16%)

Query: 3   LYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPP----------DAY 52
           L + E P++AK I             +LGN   V   +GH+ +              +A 
Sbjct: 5   LVIVESPAKAKTINK-----------YLGNDFVVKSSVGHVRDLPTSGSGSASKKSAEAN 53

Query: 53  DEKYKRWVLAD--------LPIVPEK-WKMRV-----KPKTASQFKAVKRLLGEAQELVI 98
            EK K+ V  D        + + P + W+        K K  S+ KA+ +    A  + +
Sbjct: 54  GEKAKKAVKKDEKTALVNRMGVDPYRGWQAHYEILPGKEKVVSELKALAQ---NADHVYL 110

Query: 99  ATDADREGEMIA---RELVEHCRYRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHS 155
           ATD DREGE IA   RE++     R    R+  + +   +IR+A     PG    +  ++
Sbjct: 111 ATDLDREGEAIAWHLREIIGGDDKR--FSRVVFNEITKNAIRQAFE--NPGELNINRVNA 166

Query: 156 ALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAY 215
              R   D ++G  +S L      +      L  GRVQ+  +RLVV+R+R I  FVP  Y
Sbjct: 167 QQARRFMDRVVGYMVSPLLWKKIARG-----LSAGRVQSVAVRLVVEREREIKAFVPEEY 221

Query: 216 WAIDVDLQHERITFTAQWRAAEDACDDQGRCLDPQLARDAADAMRNAATARLVKLR-TER 274
           W +  DL              E A   Q    + +  R    A   AA + L K R    
Sbjct: 222 WELHADLLAN----------PEIALQMQVTHHNGKPFRPVNQAQTQAAVSLLEKARYVVA 271

Query: 275 MREVAP------LPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLP 328
            RE  P       PF   TLQ+  S +LG G ++T+ +AQ LYE    ITY R+D   L 
Sbjct: 272 EREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGH-ITYMRTDSTNL- 329

Query: 329 LSQHSEAPKILAALARADAAVNELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQL 388
               S+    +A     D      +P       S+   +    AH  I P+       QL
Sbjct: 330 ----SQDALTMARDYIHDEFGKRYLPEAPNLYTSK---ENSQEAHEAIRPSDVKVQADQL 382

Query: 389 TGKH---RAVYTLIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALPE 445
                  + +Y LI  +++A  +   +YD T          LRA G+ +   GW + +P 
Sbjct: 383 KDMEADAQKLYQLIWRQFVACQMMPAQYDSTTLVVSAGDYQLRAKGRTLRFDGWTKVMP- 441

Query: 446 ALAPAKGREAPAPQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVE 505
             A  KG E    + LPA+  GQ  ++ K++    +T+PP  ++E  L+K +        
Sbjct: 442 --ALRKGDE---DRTLPAIDVGQSLSLEKLSPSQHFTKPPARYSEASLVKEL-------- 488

Query: 506 DPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAFSLIDAVP---RAI 562
                    +  GIG  +T A II  + DRGY+    +   A      + D +    R +
Sbjct: 489 ---------EKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEDNFREL 539

Query: 563 ADPGTTAIWEQALDMVQSGEMSLEEFVAKQAAWMSKQV 600
            +   TA  E  LD+V + +   +  + +  A  SKQ+
Sbjct: 540 MNYDFTARMENRLDLVANSQAEWKGVLDEFFAEFSKQL 577