Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 641 a.a., DNA topoisomerase III from Dickeya dadantii 3937

 Score =  419 bits (1078), Expect = e-121
 Identities = 256/651 (39%), Positives = 360/651 (55%), Gaps = 28/651 (4%)

Query: 1   MRLYLCEKPSQAKDIAAVLGAS-RRGDG-CWLGNGVTVTWCIGHLLETAPPDAYDEKYKR 58
           MRL++ EKPS A+ IA VL    RR DG    G    VTWC+GHLLE A PD YD +Y R
Sbjct: 1   MRLFIAEKPSLARAIADVLPKPHRRSDGFIACGEQDVVTWCVGHLLEQAQPDVYDARYAR 60

Query: 59  WVLADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHC- 117
           W LADLPIVP+KW ++ +P  + Q   +K+LL +A E++ A D DREG+++  E++E+  
Sbjct: 61  WSLADLPIVPQKWLLQPRPSVSKQLNVIKKLLNQADEIIHAGDPDREGQLLVDEVLEYLS 120

Query: 118 ---RYRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLF 174
                R  + R  ++ L+  ++ +A++ L+   E   L  SAL RSRADWL G+NM+R +
Sbjct: 121 LPEEKRQHVGRCLINDLNPQAVERAVSRLRENREFVPLCVSALARSRADWLYGINMTRAY 180

Query: 175 TLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDL---QHERITFTA 231
           TLLGR +GY+GVL VGRVQTP L LVV RD  I +FV   Y+ +   +     ER  F A
Sbjct: 181 TLLGRNAGYEGVLSVGRVQTPVLGLVVRRDEEIDNFVSRDYFEVKAHIVTPADER--FIA 238

Query: 232 QWRAAEDA---CDDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGTL 288
            W+ +E      D++GR L   LA      +     A +     +R  E APLP+ L  L
Sbjct: 239 LWQPSESCEPYQDEEGRLLHRPLAEHVVKRI-EGQPAWVTAYNDKRESETAPLPYSLSAL 297

Query: 289 QEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAA 348
           Q   +K+ GL AQ+ LD+ Q LYETHK+ITYPRSDC YLP    +    +L A+A   A 
Sbjct: 298 QIEAAKRFGLSAQQVLDVCQRLYETHKLITYPRSDCRYLPEEHFAGRQAVLNAIA---AH 354

Query: 349 VNELMPH--IETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQLTGKHRAVYTLIRARYLAQ 406
             +L+P   ++ +RR+R W+D KV AHH IIPT        LT     VY LI  +YL Q
Sbjct: 355 QPDLLPQPAVDPERRNRCWDDGKVDAHHAIIPTARSART-SLTESESQVYGLIARQYLMQ 413

Query: 407 FLPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPALVQ 466
           F  +  + +   D D AG    A  + + E GW+  L       +    P    LP + +
Sbjct: 414 FCADAMFRKCVIDLDIAGGKFVAKARFLAEAGWRTLLGNKERDEENEGMP----LPVVEK 469

Query: 467 GQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRA 526
           G +    +  + +  TQPP+ FT+  L+ AM  +A+ V+D  LK+ L++T G+GTEATRA
Sbjct: 470 GDELLCERGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKALKKILRETDGLGTEATRA 529

Query: 527 GIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLE 586
           GII+ L  R +LVK G+ + +T A  +LI A+P   A P  TA WE  L  +       +
Sbjct: 530 GIIELLFKRAFLVKKGRYIHSTEAGKALIHALPPMAAHPDMTAHWEATLTQISEKRCRYQ 589

Query: 587 EFV--AKQAAWMSKQVARCNGMRMTITGPASPAGRGATPWKKKRKSAPRKT 635
           +F+    Q+     Q AR +G  +T      P  R     +K+R+S    T
Sbjct: 590 DFMQPLTQSLHELIQQARQSG-NITAFRGLPPVKRAPPAGRKRRQSRSAST 639