Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 780 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  333 bits (855), Expect = 1e-95
 Identities = 214/644 (33%), Positives = 336/644 (52%), Gaps = 38/644 (5%)

Query: 1   MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDEKYKRWV 60
           M++ + EKPS A++IA V+GA  R DG + GNG  VTW  GH     PP+ YD  +KRW 
Sbjct: 1   MKVCIAEKPSVAREIAQVIGAKNRKDGYFEGNGYQVTWTFGHFCSLYPPEDYDPTWKRWD 60

Query: 61  LADLPIVPEKWKMRVKPKTA--SQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCR 118
           L  LP++P++++ ++ P      QFK ++ L+ +AQ ++   DA +EGE+I R +++   
Sbjct: 61  LYTLPMLPKRFETKIIPDNGVKKQFKIIRDLVNKAQVVINCGDAGQEGELIQRWVLKQAN 120

Query: 119 YRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLG 178
           Y+G +QRLW+S+L   SI+     LKP  E  +LY++   R+  DWL+GMN +RL+TL  
Sbjct: 121 YQGAVQRLWISSLTTESIQAGFENLKPAEEFDNLYYAGSSRAIGDWLLGMNATRLYTL-- 178

Query: 179 RQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERITFTAQWRAAED 238
           +  GY+ VL +GRVQTPTL ++V+R + I  F P  YW  ++   +   TF +       
Sbjct: 179 KYGGYKQVLSIGRVQTPTLAMLVNRHQEIEQFKPEPYW--ELQTTYRDTTFHS------- 229

Query: 239 ACDDQGRCLDPQLARDAADAMRNAATAR---LVKLRTERMREVAPLPFDLGTLQEICSKK 295
               +G+     L ++  +A+    T +   +  +  +  +E AP  FDL +LQ  C+ K
Sbjct: 230 ---TEGKF----LKKEDGEALLGQITGKDLFITAIDQKEGKEYAPKLFDLTSLQVYCNNK 282

Query: 296 LGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAAVNELMPH 355
             L A  TL   Q LYE  KV+TYPR D  +LP   + +   IL  L +  +    L+  
Sbjct: 283 FNLTADNTLKTVQRLYEL-KVVTYPRVDTTFLPNDMYPKISGILKGLGQYHSFTAPLLAK 341

Query: 356 IETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQLTGKHRAVYTLIRARYLAQFLPNHEYDR 415
            + ++  + +ND KV+ HH IIPTG  K +G    K   VY +I  R+LA F P+ +  +
Sbjct: 342 -KIRKSPKVFNDKKVTDHHAIIPTGEEKQLGHTEQK---VYDIIVRRFLAAFYPDCKVAK 397

Query: 416 TQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAK----GREAPAPQALPALVQGQDYA 471
           TQ   +       A GK ++E GW+    +     K     +E      LP   +G ++ 
Sbjct: 398 TQVTGEIEQTTFLAKGKEILEEGWRALFAKDNKKEKDDGDSKEDEEEGILPTFEKG-EHG 456

Query: 472 VAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQG 531
                LK+  T+PPK +TE  L++AM+   K VED  L+  +K   GIG  +TRA II+ 
Sbjct: 457 PHHPTLKEKITKPPKNYTEASLLRAMETAGKQVEDDELRDLMK-ANGIGRPSTRASIIET 515

Query: 532 LLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPG-TTAIWEQALDMVQSGEMSLEEFVA 590
           L  R Y+ +  K +  T     LI  +   +      T  WE+ L  ++ G  S  +F+A
Sbjct: 516 LFRRKYIERRKKLVVPTEMGIQLIGTIQNELLKSAELTGQWEKQLKEIEEGAFSAIQFIA 575

Query: 591 ---KQAAWMSKQVARCNGMRMTITGPASPAGRGATPWKKKRKSA 631
              K  A +  +V + +      +  AS   + +TP   K+K++
Sbjct: 576 NMKKMVAELVSEVKQEHNKPRLASPFASDNQKKSTPSASKKKTS 619